EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALTY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella typhimurium GN=ispF PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PHOPR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Photobacterium profundum GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 61/127 (48.03%), Postives = 87/127 (68.50%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H+     P+IIGG+ +P+E+G  AHSDGDV LH V DA+LGA+G  DIG+ FPD+D +WKGA S   +++    + + GY +GNLD T+I Q PK++PY + +   ++E L  D   VN
Sbjct:    2 RIGHGFDVHKFGGEGPVIIGGVAIPYEQGLIAHSDGDVALHAVCDALLGAIGAGDIGRHFPDTDAEWKGADSRFLLRDVYSKVKDKGYRLGNLDVTIIAQAPKMAPYIDAMCQAIAEDLETDIGNVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MANSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      PLIIGG+ VP+  G  AHSDGDV LH + DA+LGAL L DIG++FPD+D ++K   S + ++EA R + E GY+IGN+D T+I Q PK+ P+ + +R  ++E L      VN
Sbjct:    3 RIGHGFDVHAFGEARPLIIGGVEVPYHTGFIAHSDGDVALHALTDALLGALALGDIGKLFPDTDMQFKNIDSRILLREAFRRVQEKGYKIGNVDVTIIAQAPKMRPHIDAMRAVIAEDLQCSVEQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_HAES2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus somnus (strain 2336) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 60/127 (47.24%), Postives = 91/127 (71.65%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA+ L DIG++FPD+D ++KGA S   ++ A + + + GY++GN+D T+I Q PK+ PY +++RT +++ L  D   VN
Sbjct:    3 RIGHGFDVHAFGGEGPIIIGGVAIPYEKGLVAHSDGDVALHALTDALLGAMALGDIGKLFPDTDIQYKGADSRRLLRTAYQAILDKGYQVGNVDITIIAQAPKMRPYIDSMRTVIAQDLHCDIEQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_GEOTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 61/128 (47.66%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FR+G GFD+H+   G PLIIGG+++P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L+ + GY + N D T+I Q+PK++PY E ++  ++ LL A+ + VN
Sbjct:    2 FRIGQGFDVHQFVEGRPLIIGGVHIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRYKDADSAELLAHVWSLVRQEGYVLVNADCTIIAQKPKMAPYIEEMKKVIARLLEAERSQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_ENTS8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 61/127 (48.03%), Postives = 87/127 (68.50%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+I+GG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK++P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGTGPIILGGVRIPYEQGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMAPHIPQMRVFIAEDLGCHMDQVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CLOAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium acetobutylicum GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 61/127 (48.03%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            RVG G+D+H+L     LI+GG+ + + +G   HSD DVL+H ++D+ILGA GL DIG++FPDSD K+KG  S   +KE   L+ + GY+IGN+D+T+I Q+PK+SPY E I+ +L  +L  D   +N
Sbjct:    2 RVGIGYDVHKLVENRKLILGGVEIQYSKGLLGHSDADVLVHAIIDSILGAAGLGDIGKLFPDSDNKYKGISSLKLLKEVNALIKDKGYKIGNIDSTIIAQKPKISPYIEDIKKSLCNVLDIDLGSIN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_AZOVD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.307e-30
Identity = 60/127 (47.24%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+HR   G  + +GG+ +PH  G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KG  S V ++  V L+ E G+ +GN+DAT++ Q PK++P+ E +R +++E L      VN
Sbjct:    2 RIGHGYDVHRFAEGDFVTLGGVRIPHRFGLLAHSDGDVLLHALCDALLGAAALGDIGRHFPDTDPRFKGVDSRVLLRHVVALVREKGWRVGNVDATIVAQAPKMAPHIERMRLSIAEDLQVGVEQVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHISS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella sonnei (strain Ss046) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHIFL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SALTY3.307e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PHOPR3.307e-3048.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MANSM3.307e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAES23.307e-3047.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOTN3.307e-3047.662-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ENTS83.307e-3048.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOAB3.307e-3048.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOVD3.307e-3047.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHISS4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIFL4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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