EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHIF8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHIDS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHIBS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHIB3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALTI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella typhi GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALSV (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALPK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALPC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi C (strain RKS4594) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
[Close]
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salmonella paratyphi A GN=ispF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.320e-30
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 3 
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      P+IIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY +GN+D T+I Q PK+ P+   +R  ++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVN 128
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_SHIF84.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIDS4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIBS4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHIB34.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTI4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALSV4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPK4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPC4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPB4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALPA4.320e-3048.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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