EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_THISH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.120e-33
Identity = 62/127 (48.82%), Postives = 90/127 (70.87%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+H  + G  +++GG+ +PH +   AHSDGDVL+H + DA+LGA  L DIG+ FPD+DP +KGA S V ++  V L+ E GY +GN+DAT+I Q PK++P+ E +R NL++ LG     VN
Sbjct:    5 RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHFPDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLGVALECVN 131          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BACC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 10987) GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.120e-33
Identity = 63/120 (52.50%), Postives = 87/120 (72.50%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            FR+G GFD+H    G PLIIGG+ +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGVTIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWEFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_AQUAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Aquifex aeolicus GN=ispF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.120e-33
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            +  R+G GFD H    G  LI+GG+ +  + G + HSDGD LLH + DAILGALG  DIG+IF D+DP+WK APS +F+++A+ +M E G+ I N+D  ++  RPK++P+KE I+ +LS+LLG
Sbjct:    1 MELRIGFGFDSHEFVEGKLLILGGVEIEKDYGLKGHSDGDALLHAITDAILGALGERDIGEIFKDTDPRWKNAPSRIFLEKALEVMSEKGFNISNIDCVIVADRPKIAPHKERIKESLSKLLG 123          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PELCD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.299e-33
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+H+L     LI+GG+++PH  G   HSD DVLLH + DAILGALG  DIG+ FPD+DP +KG  S   + E +RL +  GY +GNLDAT+I QRPKL+P+   +R N++E  G D + +N
Sbjct:    3 RIGHGYDVHQLVAERKLILGGVDIPHTLGLLGHSDADVLLHAICDAILGALGEGDIGKHFPDTDPAYKGISSIKLLHEVMRLAETKGYRLGNLDATIIAQRPKLAPFIGNMRENIAEACGTDVSRIN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BACC4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain B4264) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.299e-33
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            FR+G GFD+H    G PLIIGGI +PHE+G   HSD DVLLH + DA LGA+   DIG+ FPD+DP +K A S+V +++    + E GYE+GNLD T+I Q+PK++P+ E++R  +SELL
Sbjct:    2 FRIGQGFDVHEFAEGRPLIIGGITIPHEKGLIGHSDADVLLHTIADACLGAIAAGDIGKHFPDTDPAFKDADSAVLLQKVWGFVREQGYELGNLDCTIIAQKPKMAPHIESMRKRISELL 121          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.454e-33
Identity = 64/127 (50.39%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+H+L     LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L    GY IGNLDAT++ QRPKL+P+   +R N++  L AD   +N
Sbjct:    2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQRPKLAPHIPQMRENIARALKADADRIN 128          

HSP 2 Score: 25.409 bits (54), Expect = 9.454e-33
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 2
Query:  686 RCKSESETHEKVDSLGENRSIAAHTVILLMKK 781
            R   ++ T E++   G    IAA+TV+LL +K
Sbjct:  126 RINVKATTTEELGFAGRGEGIAAYTVVLLERK 157          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_GEOMG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.215e-32
Identity = 66/127 (51.97%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+H L  G  LI+GG++VP+ERG   HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S   ++  + L  + GY +GN+DAT++ QRPKL+P+   +R NL+E L A+   +N
Sbjct:    2 RIGHGYDVHCLVEGRKLILGGVDVPYERGLLGHSDADVLLHAIADAILGALALGDIGKHFPDTDPQFKGADSRKLLRHVMALAGQKGYVLGNVDATIVAQRPKLAPFIPEMRANLAEDLIAEIDRIN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BORA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bordetella avium (strain 197N) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.215e-32
Identity = 67/130 (51.54%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +PFRVG GFD+H L  G PLIIGG+ + H  G   HSD DVLLH V DAILGA GL DIG+ FPD+DP++KGA S V ++EA+  +D AG+++ N+DAT+  Q PK+ P+   +  N++  LG    +VN
Sbjct:    3 IPFRVGQGFDVHALVTGRPLIIGGVRIEHSHGLLGHSDADVLLHAVTDAILGAAGLGDIGRHFPDTDPRFKGADSRVLLREAMARVDAAGWQVVNVDATVHAQAPKIGPHAPAMVANIAADLGIAHDLVN 132          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.586e-32
Identity = 67/132 (50.76%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  306 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +PF  RVG G+D+H L PG  LI+GG+++PH+RG   HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I Q+PKL+P+   +  N+++ LG   T  N
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQQPKLAPHIPGMVANIADDLGLPATRCN 133          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.089e-32
Identity = 61/127 (48.03%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R +++E LG     VN
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGSIAEDLGVAVDQVN 128          

HSP 2 Score: 22.7126 bits (47), Expect = 2.089e-32
Identity = 10/28 (35.71%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVILLMKK 781
            ++ T E++   G    IA H V LLM +
Sbjct:  130 KATTTERLGFTGREEGIAVHAVALLMAR 157          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_THISH7.120e-3348.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACC17.120e-3352.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AQUAE7.120e-3349.592-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELCD9.299e-3351.182-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACC49.299e-3353.332-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOUR9.454e-3350.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOMG1.215e-3251.972-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BORA11.215e-3251.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEJ1.586e-3250.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAB2.089e-3248.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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