EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.009e-32
Identity = 61/127 (48.03%), Postives = 91/127 (71.65%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R  ++E LG     VN
Sbjct:    2 RIGHGYDVHRFGEGDYITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVALDQVN 128          

HSP 2 Score: 22.7126 bits (47), Expect = 6.009e-32
Identity = 10/28 (35.71%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVILLMKK 781
            ++ T E++   G    IA H V LLM +
Sbjct:  130 KATTTERLGFTGREEGIAVHAVALLMAR 157          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.028e-32
Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 3
Query:  312 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            FR+GHGFD+H   E G  ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA    DIG+ FPD+DP + GA S   ++  V  + + GY+IGN+D T++ Q PK++P+ E++R N++
Sbjct:    4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQAPKMAPHIESMRVNIA 121          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SALRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinibacter ruber (strain DSM 13855) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.872e-32
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            R+G G+D+HRL  G PLI+GG+ VPH+RG   HSD DVLLH V DA+LGA  L D+G  FPD+D KWK A S   ++  V  +  AGY   N+DAT++L+RPKL P+ + +RTN++  L
Sbjct:    2 RIGFGYDVHRLVEGRPLILGGVQVPHDRGLAGHSDADVLLHAVADALLGAAALGDLGAHFPDTDAKWKDADSQALLRRVVERVQHAGYAPHNVDATVLLERPKLRPHVDEMRTNIARAL 120          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_LARHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.872e-32
Identity = 62/127 (48.82%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G+D+HRL  G PL++GG+ +P ++G + HSD D L H + DA+ GA  L DIG+ FPD+D ++KGA S V ++EAVR + EAG++I N+D+T+I Q P+L+PY E +R++L+  LG  P  VN
Sbjct:    4 RIGQGWDVHRLVEGRPLVLGGVTIPFDKGLDGHSDADALCHAITDALFGAAALGDIGRHFPDTDLEFKGADSRVLLREAVRRVREAGFDIVNVDSTVIAQAPRLAPYVEAMRSHLAADLGLSPDRVN 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BRAHW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=ispF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.018e-31
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            R+G+G+D H       LI+ GI +P+E G + HSD D ++H ++D+ILGAL L DIG  FPD+D K+KG  S V +++ V +M+E  YEI N D T+IL++PKL  Y +T+R NLS++L  D
Sbjct:    2 RIGYGYDSHAFAENRKLILSGIEIPYELGLKGHSDADAVIHALIDSILGALALGDIGSHFPDNDSKYKGISSIVLLEKTVSIMEEKNYEISNTDITIILEKPKLRNYIDTMRENLSKILKTD 123          

HSP 2 Score: 30.4166 bits (67), Expect = 1.018e-31
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVILLMK 778
            +++T+EK+DS+G    IA H V LL K
Sbjct:  130 KAKTNEKMDSIGRGEGIAVHCVSLLKK 156          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_DINSH (Bifunctional enzyme ispD/ispF OS=Dinoroseobacter shibae (strain DFL 12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.028e-31
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +  R G+G+D+HR   G  +I+ G+ VPH+R    HSD DV +H V DAI GALG  DIGQ FP SDP+WKGA S +F++ AV L  E GY I ++D TL+ +RPK+ PY   ++  +SEL+G  P  V+
Sbjct:  242 MDIRTGNGYDVHRFGTGDAVILCGVEVPHDRALMGHSDADVGMHAVTDAIYGALGDGDIGQHFPPSDPQWKGAASEIFLRHAVALAAERGYTITHMDCTLVCERPKIGPYHAVMKAKMSELMGLQPDQVS 371          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain W619) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.343e-31
Identity = 62/127 (48.82%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA GL DIG+ FPD+DP++KGA S V ++  V ++   G+++GN+DAT++ Q PK+SP+ ET+R  ++E L  +   VN
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAGLGDIGKHFPDTDPQFKGADSRVLLRHVVGIVQAKGWKVGNVDATIVAQAPKMSPHIETMRQRIAEDLQVELDQVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_THETN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermoanaerobacter tengcongensis GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 64/127 (50.39%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            RVG G+D+HR E G  L++GGI +P E+G + HSDGDVL+H ++D ILGA GL DIG+ FPD+D  +K   S + +K  + L+ E  Y + N+D  ++ +RPKLSPYK+ IRT+L+ELLG     VN
Sbjct:    5 RVGIGYDVHRFEEGKKLMLGGIEIPFEKGLKGHSDGDVLIHALIDGILGAAGLGDIGEHFPDTDVAYKEVDSKILLKRVLELVSE-HYVVNNVDCIVVTERPKLSPYKDRIRTSLAELLGVSKERVN 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 65/122 (53.28%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            R G G+D+HR+  G  +I+GG+ VP E G E HSD DVL H + DAILGA  L DIG  FPDSDP+WKG  S VF++ A  L  + GY I N+D+T+IL+RPKL  +++TIR  L+E L  D
Sbjct:    5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILERPKLKDFRQTIRERLAETLELD 126          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PROMH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 61/117 (52.14%), Postives = 85/117 (72.65%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 665
            R+GHG+D+H+     P+IIGG+ +P+E+G  AHSDGDV+LH V DAILGA+ + DIG +FPD+DP +KGA S V ++EA   +   GY IGNLD T+I Q PK+ P+   +R N++E
Sbjct:    2 RIGHGYDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVVLHAVTDAILGAVAMGDIGTLFPDTDPAYKGADSRVLLREAFSRVMAKGYRIGNLDVTIIAQAPKMLPHTPQMRVNIAE 118          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PSEA76.009e-3248.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAHCH6.028e-3250.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALRD7.872e-3252.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LARHH7.872e-3248.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BRAHW1.018e-3147.542-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DINSH1.028e-3148.46Bifunctional enzyme ispD/ispF OS=Dinoroseobacter s... [more]
ISPF_PSEPW1.343e-3148.822-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THETN1.754e-3150.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SOLUE1.754e-3153.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROMH1.754e-3152.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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