EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_HELP2 (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain P12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.204e-25
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQIS 374          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_BART1 (Bifunctional enzyme ispD/ispF OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.204e-25
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADP 683
            RVG+G+D+H  E G  LI+ GI +P  +    HSD DV LH + DA+L   G  DIG  FP SDP+WK   S +F++ A+ L+ +AG  I N+D T+I + PK+ PY+  +  NL  +L   P
Sbjct:  238 RVGNGYDVHSFEEGDFLILCGIRIPFHKKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQWKNVSSEIFLRHALSLLKQAGGRIANVDITVIAENPKIGPYRHAMIENLMTILAITP 360          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_AZOC5 (Bifunctional enzyme ispD/ispF OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.204e-25
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSEL 668
            R G GFD+H   PG  +++GG+ +P +RG + HSD DV LH + DA+LGAL   DIG  FP SDP+WKGA S  F+  A+  + E G  + +LD TLI + PK+ P+++ IR  ++ +
Sbjct:  231 RTGTGFDVHAFGPGDHVMLGGVAIPFDRGLDGHSDADVGLHALTDAVLGALADGDIGAHFPPSDPQWKGATSDRFLAFAIERVRERGGIVAHLDLTLICEAPKVGPHRDAIRAEIARI 348          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PELLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=ispF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G D+H    G  LI+GG+++P  +G E HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   RL+ + GY   N+DA L+L+ PK++PY   +R N++  L  D ++V+
Sbjct:    2 RIGIGIDVHPFAEGRKLIVGGVDIPSPKGLEGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSAEYKDIDSMILLKHVGRLLTKNGYRTVNVDAMLLLEAPKIAPYVADMRRNIARCLDIDTSLVS 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPJ (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori J99 GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 55/126 (43.65%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++
Sbjct:  252 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELLEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQIS 377          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPH (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain HPAG1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.184e-25
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DA+LGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAVLGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQIS 374          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_GLOVI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Gloeobacter violaceus GN=ispF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.513e-25
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            R+G+G+D HRL  G  LI+GG+ +P+  G   HSD D+L H + DA+LGA  L DIG+ FP  DP+W+   S + + + + L+   G  + N+DA ++ +RPKL+P+   IR +L+  LG
Sbjct:    9 RIGNGYDFHRLVEGRRLILGGVEIPYRLGLLGHSDADLLTHAITDALLGAACLGDIGRHFPPGDPQWQDVSSLLLLSKVLELVRGRGLRLSNVDAVVVAERPKLAPHIPAIRQSLAGALG 128          

HSP 2 Score: 23.8682 bits (50), Expect = 4.513e-25
Identity = 10/29 (34.48%), Postives = 18/29 (62.07%), Query Frame = 2
Query:  686 RCKSESETHEKVDSLGENRSIAAHTVILL 772
            R   ++ T+E +  +GE  ++A H V+LL
Sbjct:  133 RLSVKATTNEGLGPVGEGLAMACHAVVLL 161          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMC5 (Bifunctional enzyme ispD/ispF OS=Campylobacter curvus (strain 525.92) GN=ispDF PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.464e-25
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  321 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            G GFD H  E G  L + G  + +E G +AHSDGDV LH + DAILGA GL DIG++FPD+D ++KG  S + ++EA + +   G+E+ N D T++ +RPK+S +K  +  N++  L   P  +N
Sbjct:  214 GIGFDAHEFERGRELWLCGEKIEYEFGLKAHSDGDVALHALTDAILGAAGLGDIGELFPDTDAEFKGISSLLLLQEAYKKVQSVGFELVNADITIMAERPKISKFKRKMEANIAGALNLAPNRIN 338          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_TREPA (Bifunctional enzyme ispD/ispF OS=Treponema pallidum GN=ispDF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.137e-25
Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVV 692
            RVG G D+H L  G PLI+ GI++P ++G + HSD DVL H  +DA+LGA GL DIG  FP  D +WK A S   ++   +L+  A + + NLDA + L++P L P++E +R +L++ L    T V
Sbjct:  244 RVGLGTDMHALCAGRPLILAGIHIPSKKGAQGHSDADVLAHASIDALLGAAGLGDIGTFFPSCDGRWKDAHSCALLRHTWQLVRAACWRLVNLDAVVCLEQPALHPFREAMRASLAQALDTHVTRV 369          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_HELAH (Bifunctional enzyme ispD/ispF OS=Helicobacter acinonychis (strain Sheeba) GN=ispDF PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.137e-25
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH ++DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAMIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQIS 374          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_HELP23.204e-2543.65Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_BART13.204e-2543.09Bifunctional enzyme ispD/ispF OS=Bartonella triboc... [more]
ISPDF_AZOC53.204e-2544.92Bifunctional enzyme ispD/ispF OS=Azorhizobium caul... [more]
ISPF_PELLD4.184e-2542.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_HELPJ4.184e-2543.65Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_HELPH4.184e-2542.86Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPF_GLOVI4.513e-2541.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CAMC55.464e-2543.20Bifunctional enzyme ispD/ispF OS=Campylobacter cur... [more]
ISPDF_TREPA7.137e-2543.65Bifunctional enzyme ispD/ispF OS=Treponema pallidu... [more]
ISPDF_HELAH7.137e-2542.86Bifunctional enzyme ispD/ispF OS=Helicobacter acin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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