EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMHC (Bifunctional enzyme ispD/ispF OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=ispDF PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.590e-24
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  321 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            G+GFD+H    G  + +GG+ +P E     HSD D  +H ++DAILGA GL DIG++FPD+D  +KG  S + +++ V  +   G++I N D T+I Q+PK+SPYKE +   LSE+L
Sbjct:  215 GNGFDVHAFAKGEFITLGGVKIPCEYSLVGHSDADAAIHALMDAILGACGLGDIGELFPDTDDSFKGIDSKILLQKVVNFVHLLGFKIINADITIIAQKPKISPYKEKMCEILSEIL 331          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJR (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni (strain RM1221) GN=ispDF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.076e-24
Identity = 52/125 (41.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  321 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRIN 337          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJE (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni GN=ispDF PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.076e-24
Identity = 52/125 (41.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  321 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRIN 337          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRT5 (Bifunctional enzyme ispD/ispF OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ispDF PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.076e-24
Identity = 50/120 (41.67%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            R G+G+D+H+LE G  + + GI + H++  + HSD DV LH + DA+L   G  DIG  FP SDP+WKGA S +F++ A +++ + G  I N D +LI + P++ P+++ +R  LS++LG
Sbjct:  241 RTGNGYDVHQLEAGDGVTLCGIFIEHDQRLKGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWKGAASRIFLEHAAKVVRDNGGTIMNADVSLIAEAPRIGPHRQAMREALSDMLG 360          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PELTS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ispF PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.542e-24
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            RVG G+D+H+L  G PL++GG+++P  +G   HSD DVL H V+DA+LGA G  DIG+ FPD+D ++KG  S   +     ++   G  + N+D+ ++ Q PKLSP+ E ++  ++  L   P+ V+
Sbjct:    2 RVGFGYDVHKLVEGRPLVLGGVSIPFVKGLLGHSDADVLAHAVMDALLGAAGAGDIGRHFPDNDGRYKGISSMKLLARVGDILSRQGLAVVNIDSVVVAQGPKLSPFIEEMQKRMAGALQIQPSQVS 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CHLPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ispF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R G G D+H    G  L+IGG+ +P  +G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   +L+D+ G+ I N+DA L+L+ PK++ Y   +R N++  LG +   V+
Sbjct:    2 RTGIGIDVHPFAEGRKLVIGGVEIPSAKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKHVKKLLDKEGFRIVNIDAMLLLEAPKIASYINEMRKNIARCLGLELNAVS 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_BARHE (Bifunctional enzyme ispD/ispF OS=Bartonella henselae GN=ispDF PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            R G+G+D+H  E G  LI+ GI +P  +    HSD DV LH + DA+L   G  DIG  FP SDP+W+   S +F++ A+ ++ +AG  I N+D TLI + PK+ PY+  +  NL  +L
Sbjct:  237 RTGNGYDVHSFEEGNSLILCGIKIPFHKKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDPQWQNVSSEIFLRHALDIVKQAGGRIANVDITLIAEEPKIGPYRHAMVGNLMNML 355          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_EHRRW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia ruminantium (strain Welgevonden) GN=ispF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.821e-24
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  312 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FR+G G+D+HR +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A SS F+ EA +   E GY I N D  +I ++PK+ PY   ++  +++    DP+ +N
Sbjct:   10 FRIGIGYDVHRFDNINNDDSNTSITICGIKINYHKKIIAHSDGDVGLHALADAILGAVGCGSIGQHFPNTDKKWKNAESSHFVIEAQKKAQERGYIISNADIIIICEQPKIMPYALEMQHYIAQFTSIDPSFIN 143          

HSP 2 Score: 24.2534 bits (51), Expect = 4.821e-24
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVIL 769
            ++ T EK+ ++G N  IAA  ++L
Sbjct:  145 KATTTEKLGAIGRNEGIAAQAIVL 168          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_EHRRG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia ruminantium (strain Gardel) GN=ispF PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.821e-24
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  312 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FR+G G+D+HR +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A SS F+ EA +   E GY I N D  +I ++PK+ PY   ++  +++    DP+ +N
Sbjct:   10 FRIGIGYDVHRFDNINNDDSNTSITICGIEINYHKKIIAHSDGDVGLHALADAILGAVGCGSIGQHFPNTDQKWKNAKSSHFVIEAQKKAQERGYIISNADIIIICEQPKIMPYALEMQHYIAQFTSIDPSFIN 143          

HSP 2 Score: 24.2534 bits (51), Expect = 4.821e-24
Identity = 9/24 (37.50%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVIL 769
            ++ T EK+ ++G N  IAA  ++L
Sbjct:  145 KATTTEKLGAIGRNEGIAAQAIVL 168          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PELPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 51/127 (40.16%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G D+H    G  L+IGG+++P   G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K+  +L+++ GY+  N+DA L+L+ PK++PY   +R N++  L  +  +V+
Sbjct:    2 RIGIGIDVHPFAEGRKLVIGGVHIPGHNGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKQVRKLLEKHGYQTVNIDAMLLLEEPKIAPYITGMRKNIARCLDIEIGMVS 128          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_CAMHC1.590e-2444.44Bifunctional enzyme ispD/ispF OS=Campylobacter hom... [more]
ISPDF_CAMJR2.076e-2441.60Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJE2.076e-2441.60Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_AGRT52.076e-2441.67Bifunctional enzyme ispD/ispF OS=Agrobacterium tum... [more]
ISPF_PELTS3.542e-2440.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLPD4.626e-2440.942-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_BARHE4.626e-2442.02Bifunctional enzyme ispD/ispF OS=Bartonella hensel... [more]
ISPF_EHRRW4.821e-2441.042-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRRG4.821e-2441.042-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PELPB7.891e-2440.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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