EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_NITSB (Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp. (strain SB155-2) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 50/127 (39.37%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G+G D+H       L + GI +P+++G   HSD DV +H ++DA+LGA G  DIG++FPDSD  +K   S   + E VRL+   G+ I ++D T++ Q PK+ P+KE ++ +L +LL     ++N
Sbjct:  213 RIGNGLDVHAFCEDRKLYLCGIEIPYDKGLAGHSDADVAIHALIDALLGAAGFGDIGELFPDSDETYKDIDSKKLLCETVRLLRACGFVIEHVDLTIVAQNPKIGPFKEKMKESLHDLLQIPYHLIN 339          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_GLUOX (Bifunctional enzyme ispD/ispF OS=Gluconobacter oxydans GN=ispDF PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 57/119 (47.90%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            RVG G+D+H  E G  LI+ GI VPH +G   HSD DV +H + DAI GAL   DIG+ FP SD KWK   S+ F+  A   + E G  + N D TLI +RPK+ P+ E +R  L++LL
Sbjct:  228 RVGLGYDVHAFEEGRKLILCGIEVPHTKGLAGHSDADVGIHTLCDAIYGALAEGDIGRHFPPSDNKWKDMDSARFLVHAGERIRERGGFLVNADVTLICERPKIGPHAEAMRNRLADLL 346          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVV (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q PKLSP+++ IR N++ LL    T VN
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLLDLPVTSVN 364          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVH (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ispDF PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.891e-24
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q PKLSP+++ IR N++ LL    T VN
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLLDLPVTSVN 364          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_WIGBR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=ispF PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.031e-23
Identity = 54/128 (42.19%), Postives = 84/128 (65.62%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            RVGHGFD+H+    Y PLI+GG+++P+ +G  +HSDGDV++H ++D++LGA  L DIG +FP++D K+K   S + ++     + +  Y+IGN+D TL L+ PK+S Y   I   +S  L     V+N
Sbjct:    2 RVGHGFDIHKFGKIYKPLILGGVHIPYCKGVVSHSDGDVIIHSIIDSLLGASSLGDIGILFPNNDIKYKNINSCILLQVVWNCIKKK-YKIGNIDVTLFLEYPKISSYTNKICLCISNCLKCKTDVIN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_LAWIP (Bifunctional enzyme ispD/ispF OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.031e-23
Identity = 56/133 (42.11%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  318 VGHGFDLHRL-------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            VG+G+D+H+        +P   + +GGI++P+     AHSDGDVLLH ++DA+LG +G  DIG  FPDSD ++ G  S++ +   +  + E+  +I ++DAT++ Q PK+S Y+E IR+NLS LL  D   VN
Sbjct:  237 VGYGYDVHKYVTEDQINQPIRSMRLGGISIPNAPNVVAHSDGDVLLHALMDALLGCIGGGDIGLHFPDSDKRYDGINSAILLDHVLTKVLESSIKIVHMDATIVAQLPKISQYREAIRSNLSRLLDLDLANVN 369          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_NEOSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Neorickettsia sennetsu (strain Miyayama) GN=ispF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.346e-23
Identity = 52/128 (40.62%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGAL---GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            +RVG G+D+H+++         +++ G++VP E    AHSDGDV LH +VDA+LGA    G  DIG +FPD+D KW+G  SS F++  V L+  AGY + N D T++ + P++  YK  ++  +++LL
Sbjct:    2 YRVGFGYDVHKIDKPVKTGNTCIVLCGVSVPCEYKVIAHSDGDVALHALVDALLGAACIEGANDIGMLFPDTDEKWRGKSSSYFVEHVVTLIQRAGYVVNNADLTIVCETPRIQQYKSEMQQQVADLL 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_PELUB (Bifunctional enzyme ispD/ispF OS=Pelagibacter ubique GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.346e-23
Identity = 52/127 (40.94%), Postives = 77/127 (60.63%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            + G GFD+HRL P   L +GG+ +P   G   HSDGD +LH V DAILGA  + DIG+ F D + K+K   S++ + E ++   + GY I NLD  +I Q+PK+  YK+ I   ++++    PT +N
Sbjct:  215 KFGIGFDVHRLVPNKKLYLGGVKIPSPIGTLGHSDGDPVLHAVTDAILGACSMGDIGEKFSDKNKKFKNIRSTILLSEIIKQTLKKGYLINNLDINIITQKPKIQKYKKQILNCIAKICNISPTQIN 341          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_UNCTG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ispF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.758e-23
Identity = 46/118 (38.98%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            +G G+D HRL+ G  LI+GG+ +    G + HSD DVL+H ++DA+LGA GL DIG  FPD DPK+K   S   ++   + + +  + + N+D T+I++ PK+ P+   ++ N+S ++
Sbjct:    3 IGFGYDAHRLKKGRELILGGVKILTSEGLDGHSDADVLIHALMDALLGAAGLNDIGHFFPDMDPKYKNVSSISLLESVYKELKKQNFSVNNVDITVIVEAPKICPFIADMKENISRVI 120          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SACD2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=ispF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.758e-23
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 665
            R+G G D+H    G  ++IGG+ +P+ERG  AHSDGDVLLH + DA+LGA  L DIG+ FPD+D  +K A S   ++     +   GY + N D T++ Q PK++P+   +R  ++E
Sbjct:    2 RIGQGVDVHAFGDGDKIVIGGVVIPYERGLVAHSDGDVLLHALCDALLGAAALGDIGKHFPDTDSAYKNACSRTLLRMVYSKLKAKGYSLVNADMTIVAQAPKMAPHISDMRAKIAE 118          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_NITSB7.891e-2439.37Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp.... [more]
ISPDF_GLUOX7.891e-2447.90Bifunctional enzyme ispD/ispF OS=Gluconobacter oxy... [more]
ISPDF_DESVV7.891e-2442.86Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPDF_DESVH7.891e-2442.86Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPF_WIGBR1.031e-2342.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_LAWIP1.031e-2342.11Bifunctional enzyme ispD/ispF OS=Lawsonia intracel... [more]
ISPF_NEOSM1.346e-2340.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_PELUB1.346e-2340.94Bifunctional enzyme ispD/ispF OS=Pelagibacter ubiq... [more]
ISPF_UNCTG1.758e-2338.982-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SACD21.758e-2342.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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