EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJD (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=ispDF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.758e-23
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  321 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA  L DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAVLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRIN 337          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CHLCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=ispF PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.296e-23
Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            R+G G D+H    G  L+IGG+ +P   G + HSD DVLLH + DA+LGA  L DIG  FP++  ++K   S + +K   +L+ E GY   N+DA L+L+ PK++PY + +R N+++ LG
Sbjct:    2 RIGIGIDVHPFAAGRKLVIGGVYIPGHDGLDGHSDADVLLHAISDALLGAAALGDIGLHFPNTSAEFKDIDSMILLKHVGKLLAEHGYAPVNVDAMLLLEAPKIAPYIQQMRQNIADALG 121          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_SULDN (Bifunctional enzyme ispD/ispF OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ispDF PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.296e-23
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  321 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            G GFD+H  +    + +GGI +  E G  AHSDGDV +H ++DA+LGA G+ DIG +FPD+D K+KGA S   +   V  +   G+ I N+D T+  ++P++  YK  +R  +S +LG D   VN
Sbjct:  228 GVGFDVHAFDDKGEMFLGGIKIDSEYGFLAHSDGDVAIHALIDALLGAAGMGDIGMMFPDNDVKYKGADSKELLGTLVTKLRHFGFVIVNVDITIAAEKPRIGNYKMAMRKKISSILGIDAQRVN 352          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SYNAS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=ispF PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.998e-23
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            RVG G+D HR      LI+GG+ +PHE G   HSD D L H + DA+LGA+   DIG  FPDSDP + G  S   + + + ++D+ G+ I  +D+T+I++RPKL PY   +++ ++ +L
Sbjct:    2 RVGCGYDSHRWAAKRKLILGGVEIPHEFGLTGHSDADALTHAICDALLGAISEGDIGFQFPDSDPAYSGISSLKLLSKILEMVDKKGFAIDYIDSTVIMERPKLMPYIPDMKSKIAGVL 120          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_HELHP (Bifunctional enzyme ispD/ispF OS=Helicobacter hepaticus GN=ispDF PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.916e-23
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +G+G D+H+ E    + +GG+ +    G +AHSDGDV+LH + DAILGA+G  DIG+ FPD+D  +K A S + + E        GYE+ N D ++I Q PK++PYK  +R  ++ +L      +N
Sbjct:  225 IGNGIDVHQFEKNKQMWLGGVEIESPFGFKAHSDGDVVLHALSDAILGAIGGGDIGEWFPDTDETYKNADSKMMLSEIYTFAQSVGYELYNADISIIAQTPKIAPYKSAMRECIARILRVPNAHIN 350          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_ANAMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anaplasma marginale (strain St. Maries) GN=ispF PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.701e-23
Identity = 50/134 (37.31%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYP----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +PFRVG G+D+H      P    +++ G+ +   R  +AHSDGDV  H +VDA+LG +G   IG+ FP++DP+W+   S+ F+ EA       GY + N D T++ + PK+ P+   ++  +S+LLG D + +N
Sbjct:    8 VPFRVGIGYDVHGFADSPPENGHIVLCGVEIAFHRKIKAHSDGDVGTHALVDALLGCVGEGSIGEHFPNTDPRWENMSSTHFLLEAQSKALAKGYAVLNFDLTIVCELPKIIPHVPKMKLFMSKLLGMDASAIN 141          

HSP 2 Score: 25.0238 bits (53), Expect = 6.701e-23
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 2
Query:  707 THEKVDSLGENRSIAAHTVILLMK 778
            T EK+  +G    IAAH V+L  K
Sbjct:  146 TTEKLGFIGRGEGIAAHAVVLCRK 169          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_AZOPC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=ispF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 46/125 (36.80%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            +  R+G G+D+H L   Y L +GGI +P+E+G + HSD DVL+H + DA+LGA  + +IG  FP+++ K +   S + +K+ +  +    YE+ N D T+ +++PKL+P+   ++T L+E++  D
Sbjct:    1 MKIRIGFGYDVHPLVMNYNLWLGGIKIPYEKGLKGHSDADVLIHALCDALLGAADIGNIGTNFPNTNKKLRNIDSKILLKQTMSFIYSKNYELNNADITVCIEQPKLNPFIPQMKTCLAEIMQTD 125          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_GRABC (Bifunctional enzyme ispD/ispF OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.724e-23
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            R+G G+D+H  E G  LI+ GI VPH +G   HSD DV +H + DAI GAL   DIG+ FP ++  WK A S+ F++ A   +   G  + N D TLI ++PK++P+   +   L+ELLG
Sbjct:  220 RIGTGYDVHAFETGRKLILCGIEVPHHQGLAGHSDADVGIHALCDAIYGALAEGDIGRHFPPTEASWKDADSARFLRHAAERIAARGGFLANADLTLICEKPKITPHAPAMIARLAELLG 339          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BLOPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=ispF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.139e-22
Identity = 51/127 (40.16%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G+GFD+H+     PL IGG+++P  +G +AHSDGDV++H ++DA+LGA    DIG +FPD+D K+    S   ++ A   +   G+ + N+D T+ILQ PK++ Y   ++ +LS+ L    T +N
Sbjct:    3 RIGYGFDVHQFGGCRPLTIGGVSIPCMKGIKAHSDGDVMMHSLIDALLGAACCGDIGSMFPDTDAKYNNIDSRKLLRIAWEKITMQGFLLENIDITVILQIPKINTYIYQMKHHLSQDLNCSVTSIN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BACV8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.139e-22
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            +  RVG GFD+H+L  G  L +GGI   HE G   HSD DVL+H + DA+LGA  + DIG  FPD+  ++K   S + + E V L+   GY++GN+DAT+  +RPKL      ++  L+ L+  D
Sbjct:    1 MKIRVGFGFDVHQLVTGRELWLGGIKFEHELGLLGHSDADVLIHAICDALLGAANMRDIGYHFPDTAGEFKNIDSKILLAETVDLIAAKGYKVGNVDATICAERPKLKARIPEMQLVLAHLMRID 125          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_CAMJD1.758e-2340.80Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPF_CHLCH2.296e-2342.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SULDN2.296e-2341.60Bifunctional enzyme ispD/ispF OS=Sulfurimonas deni... [more]
ISPF_SYNAS2.998e-2342.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_HELHP3.916e-2339.68Bifunctional enzyme ispD/ispF OS=Helicobacter hepa... [more]
ISPF_ANAMM6.701e-2337.312-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOPC8.724e-2336.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_GRABC8.724e-2343.33Bifunctional enzyme ispD/ispF OS=Granulibacter bet... [more]
ISPF_BLOPB1.139e-2240.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACV81.139e-2242.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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