EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_LEIXX (Bifunctional enzyme ispD/ispF OS=Leifsonia xyli subsp. xyli GN=ispDF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.139e-22
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            R+G G D H  +P   L + G+    E G   HSDGDV+ H +VDA+L A  L DIG +F   DP++ GA   VF+ E  RL++E G+ IGN+ A ++  RPK +P +    T LS +LGA  +V
Sbjct:  234 RIGFGTDTHAFDPSAELWLAGLRWEGEPGLAGHSDGDVVAHAIVDALLSAARLGDIGGVFGTGDPRFSGAHGEVFLTETRRLVEEEGFRIGNVSAQIVGNRPKFAPRRAEAETLLSRVLGAPVSV 358          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_DESDG (Bifunctional enzyme ispD/ispF OS=Desulfovibrio desulfuricans (strain G20) GN=ispDF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.488e-22
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  318 VGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            VG G+D+HR    G P+ +GG+ +    G  AHSDGDVLLH + DA+LG +GL DIG +FPD+D  +  A S+V + E +     AG  I ++D T+I Q P+++P+++ I  N+  +   D + VN
Sbjct:  241 VGWGYDVHRFGSDGRPMKLGGVPIAGGPGVIAHSDGDVLLHALTDAVLGCMGLGDIGMLFPDTDAAYDNADSAVMLNEVLEKARNAGLLITHVDLTIITQIPRITPWRDQIHKNICRITRLDASSVN 367          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_DESPS (Bifunctional enzyme ispD/ispF OS=Desulfotalea psychrophila GN=ispDF PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.538e-22
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPY 635
            R+GHGFD H+L     LI+GG+ +P+  G   HSD DVL+H + DA+LGA+G  DIG+ FPDS   +K   S   ++  ++ + E  Y+IGN D ++I Q PKL+PY
Sbjct:  232 RIGHGFDAHQLVEKRRLILGGVEIPYHLGLAGHSDADVLVHALCDALLGAIGAGDIGRHFPDSSDAFKDIYSIRLLESVMQKVGELNYKIGNADISVICQAPKLAPY 338          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_MAGSA (Bifunctional enzyme ispD/ispF OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ispDF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.330e-22
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLI-IGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            R   G+D+HR +P      + G+ VPHE G   HSD DV LH + DA+LGA+   DIG  FP +D +WKGA S  F+  A  L+   G  I N+D T+I +RPK+ P++  +   ++E+LG
Sbjct:  227 RSASGYDVHRFDPAKDACWLCGVPVPHEAGLLGHSDADVGLHALTDAVLGAISAGDIGHHFPPTDARWKGAASDQFLAHAGSLVTAKGGRIVNVDVTIICERPKVGPHRAAMAARVAEILG 347          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV  H + DA+L A GL DIG +F   DP+W+G   +  ++  V L+ + GY +GN    ++  RPK+   +   +  LS LL A  +V
Sbjct:    6 RVGLGVDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAAHALCDAVLSAAGLGDIGDVFGVGDPRWEGVSGATMLRHVVELITQHGYRVGNASVQVVGNRPKIGWRRYEAQAVLSRLLNAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 3
Query:  312 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSEL 668
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +   PK+SP +  +  +L+ +
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYVGDHPKISPIRAELNASLANI 122          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_LEPBA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 3
Query:  312 FRVGHGFDLHRL--EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSEL 668
            FRVG+G D H+L  EP  PL++ G+ +  E     HSD DV+LH V DAILGAL L DIG  FPD+DP++K   S+  I++ + L+ E  +++ N+D T +   PK+SP +  +  +L+ +
Sbjct:    2 FRVGNGIDFHKLIHEPFRPLVLAGVEIKSEFAFLGHSDADVILHAVADAILGALSLGDIGVHFPDTDPQYKNMKSTRIIEKCLELVAEKKFKLINVDCTYVGDHPKISPIRAELNASLANI 122          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CELJU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPY 635
            +  R+G G+D+H    G  ++IGG+ +PH  G  AHSDGDVLLH + DA+LGA+ L DIG+ FPD+D +++ A S   ++     + + G+++ N D T++ Q P+++ Y
Sbjct:    1 MSMRIGQGYDVHAFGEGEKIVIGGVVIPHHHGLVAHSDGDVLLHALCDALLGAVALGDIGKHFPDTDMQYRNADSRSLLRMVYAKVSQHGWKLANADMTIVAQAPRMASY 110          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 50/116 (43.10%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLS 117          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            R+G+GFD+H      PLIIGG+ +P+ +G  AHS+GD+L+H ++DA+LGA  + DIG  FP  D K+K   S + +K   + +    Y I N+D T+I + PK+  Y   +R+N++
Sbjct:    2 RIGYGFDIHAFGSIKPLIIGGVQIPYNKGLIAHSNGDLLIHSLIDALLGATAMGDIGTFFPSEDKKYKNINSRILLKYIWKRIYLKNYRISNIDITIITETPKILSYIFLMRSNIA 117          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_LEIXX1.139e-2242.40Bifunctional enzyme ispD/ispF OS=Leifsonia xyli su... [more]
ISPDF_DESDG1.488e-2240.94Bifunctional enzyme ispD/ispF OS=Desulfovibrio des... [more]
ISPDF_DESPS2.538e-2245.79Bifunctional enzyme ispD/ispF OS=Desulfotalea psyc... [more]
ISPDF_MAGSA4.330e-2242.15Bifunctional enzyme ispD/ispF OS=Magnetospirillum ... [more]
ISPF_MYCMM5.655e-2240.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPBP5.655e-2242.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPBA5.655e-2242.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CELJU5.655e-2240.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAT5.655e-2243.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAP5.655e-2240.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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