EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 50/116 (43.10%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLS 117          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BUCA5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=ispF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.655e-22
Identity = 50/116 (43.10%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLS 117          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_SPHWW (Bifunctional enzyme ispD/ispF OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ispDF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.385e-22
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLG 674
            R   GFD+H    G  + +GG+ + H+R    HSD DV LH + DA+LG +   DIG  FP SD +WKGA S++F+  A  L+  AG  +  +D T+I + PK+ P++  IR  ++ LLG
Sbjct:  225 RTAMGFDVHGFTAGDGVQLGGVRIAHDRALAGHSDADVALHALTDALLGTIAAGDIGSHFPPSDQRWKGADSAMFLAHARDLVAAAGGIVDFVDLTIICEAPKVGPHRAAIRDRIAALLG 344          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_DESMR (Bifunctional enzyme ispD/ispF OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=ispDF PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.645e-22
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  321 GHGFDLHRL--------EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            G+G+D+HR         +P  P+ +GG  +       AHSDGDVLLH + DA+LG +   DIG++FPDS+P +    S VF+ EA+      G  I ++D T+I Q PK+SP+ E IR N++ LLG +   VN
Sbjct:  238 GYGYDVHRYADPRNPGKQPPRPMKLGGFPILGAPEVLAHSDGDVLLHALTDAVLGCVAGGDIGRLFPDSNPDFDNMASGVFLSEALLAAKAKGLTITHVDLTIIAQIPKISPHAEAIRLNVAALLGLNKEQVN 370          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A  +V
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A  +V
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A  +V
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A  +V
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCBO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium bovis GN=ispF PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.806e-21
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+  P   GC  HSDGDV +H + DA+L A GL DIG++F   DP+W+G   +  ++  V L+ + GY +GN    +I  RPK+   +   +  LS LL A  +V
Sbjct:    6 RVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_RHOSR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.665e-21
Identity = 48/125 (38.40%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  +++ N    +I  RPK+ P +   +  LS++LGA  +V
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEEDDFDVANAAVQVIGNRPKIGPRRNEAQKVLSDILGAPVSV 126          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_BUCAI5.655e-2243.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCA55.655e-2243.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SPHWW7.385e-2240.83Bifunctional enzyme ispD/ispF OS=Sphingomonas witt... [more]
ISPDF_DESMR9.645e-2241.35Bifunctional enzyme ispD/ispF OS=Desulfovibrio mag... [more]
ISPF_MYCTU2.806e-2140.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCTA2.806e-2140.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBT2.806e-2140.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBP2.806e-2140.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCBO2.806e-2140.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOSR3.665e-2138.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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