EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.665e-21
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  312 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            F+VG G+D+H+ +          + I GI + + +   AHSDGDV LH + DAILGA+G   IGQ FP++D  WK   S  F+ EA +   E GY I N D T+I ++PK+ P+   ++  ++ L+  DP+ +N
Sbjct:   10 FKVGIGYDVHKFDNTCYNDANTFITICGIKINYHKKIIAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNTWKNIKSDYFLIEAQKKAQEKGYSISNADITIICEQPKIMPHALEMQEYIANLICIDPSCIN 143          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_EHRCJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ehrlichia canis (strain Jake) GN=ispF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.665e-21
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  312 FRVGHGFDLHRLE------PGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            F+VG G+D+H+ +          + I GI + H +   AHSDGDV LH + DAILGA+G   IGQ FP++D KWK A S  F+ EA     E GY I N D  +I ++PK+ P+   ++  ++ L+  D + +N
Sbjct:   10 FKVGIGYDVHKFDNIEYDATNTFITICGIKINHHKKIVAHSDGDVGLHALTDAILGAVGCGSIGQHFPNTDNKWKDAKSDYFLIEAKNKAQEKGYYISNADIIIICEQPKIMPHALKMQEYIANLIKIDTSCIN 143          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_THEFY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermobifida fusca (strain YX) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.066e-20
Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 677
            VG G D+H  + G PL + G+  P E G   HSDGDV  H   DA+  A  L D+G  F  SDP+W+GA     + EA + +  AGYEIGN+   +I  RPK +P +      LS  +GA
Sbjct:    2 VGVGTDVHPFQTGRPLFLAGLEWPDEVGLSGHSDGDVAAHAACDALFSACALGDLGSQFGTSDPRWRGASGVALLTEAAQRVRAAGYEIGNIAIQIIGNRPKFAPRRHEAEKVLSAAVGA 121          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_NOCFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardia farcinica GN=ispF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.066e-20
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +EPG P  + G+    E GC  HSDGDV  H + DA+L A GL D+G +F    P+W     +  + E  RL+ EAG+E+ N    +I  RPK+ P +   +  L +LL A  +V
Sbjct:    2 RVGIGSDVHPIEPGRPCWMAGLLFEGEDGCSGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWADVSGAAMLTEVRRLLGEAGFEVVNAAVQVIGNRPKIGPRRAEAQRVLGDLLDAPVSV 126          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae GN=ispF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.066e-20
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A  +V
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCLB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium leprae (strain Br4923) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.066e-20
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG GFD+H  EPG P  + G+  P   GC  HSDGDV +H + DA+L A G  DIG +F   DP+W+    +  ++  V L+   GYE+ N    +I  RPK+ P +   +  LS LL A  +V
Sbjct:    6 RVGLGFDVHVFEPGRPCWLVGLLFPDNDGCAGHSDGDVAVHALCDAVLSAAGQGDIGGLFAVGDPRWERVSGADMLRHVVELLLRHGYEVVNASVQVIGNRPKIGPRRTEAQRLLSALLRAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_THEMA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga maritima GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.819e-20
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  309 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            P  +G G+D H L  G  L++ G+ +    G   HSDGDVL H ++DA+LGA  L DIG  FP++  ++K A S   +KE V++++E G+ + N+DAT++    KLSPY+E I  NL   L
Sbjct:    5 PMFIGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKIVENLKSAL 124          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_NOCSJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=ispF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.819e-20
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHE-RGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+HRL  G PL + G++ P E +G E HSD DV  H   DA+  A GL D+G  F  +DP W GA  +  ++E  R +  AG+EIGN+   +I  RP+L   +    T LS  +GA  +V
Sbjct:    6 RVGIGTDVHRLVDGVPLHLAGLHWPDEPQGLEGHSDADVAAHAACDALFSAAGLGDLGSNFGTADPAWAGASGAALLEETARRVRAAGFEIGNVAVQVIGNRPRLGGRRAEAETALSAAVGAPVSV 131          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_RHOOB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus opacus (strain B4) GN=ispF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.376e-20
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +E G P  + G+    E GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL+++  + + N    +I  RPK+ P +   +  LS++LGA  +V
Sbjct:    2 RVGIGTDVHPIEQGRPCWMAGLLFEDENGCAGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWSGVSGAAMLAEVRRLLEQDDFGVANAAVQVIGNRPKIGPRRNEAQKVLSDILGAPVSV 126          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_THENN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            +G G+D H L  G  L++ G+ +    G   HSDGDVL H ++DA+LGA  L DIG  FP++  ++K A S   +KE V++++E G+ + N+DAT++    KLSPY+E I  NL   L
Sbjct:    8 IGFGYDRHPLVEGRRLVLAGVEIDAPLGSLGHSDGDVLSHAIIDALLGAGCLGDIGTWFPET-KEYKDANSLDLLKETVKILEERGFSVVNVDATVVASIVKLSPYREKILENLKSAL 124          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_EHRCR3.665e-2138.812-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_EHRCJ3.665e-2139.552-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEFY1.066e-2041.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_NOCFA1.066e-2040.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLE1.066e-2040.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCLB1.066e-2040.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEMA1.819e-2042.152-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_NOCSJ1.819e-2042.062-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RHOOB2.376e-2037.602-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THENN4.052e-2042.372-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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