EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_RHOE4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +E G P  + G+      GC  HSDGDV +H + DA+L A GL D+G +F    P+W G   +  + E  RL++E  + +GN    +I  RPK+ P +   +  LS++LGA  +V
Sbjct:    2 RVGLGTDVHPIEVGRPCWMAGLLFEEADGCSGHSDGDVAVHALCDALLSAAGLGDLGSVFGTGRPEWDGVSGARMLAEVRRLLEENQFTVGNAAVQVIGNRPKIGPRRGEAQKVLSDILGAPVSV 126          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium paratuberculosis GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA  +V
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG G D+H +E G P  + G+    E GCE HSDGDV  H + DA+L A GL D+G +F    P+W G   +  +     L+ + G++IGN    +I  RPK+ P +   +  LS L+GA  +V
Sbjct:    6 RVGIGTDVHPIEEGKPCWLLGLLFSDENGCEGHSDGDVAAHALCDALLSAAGLGDVGAVFGTGRPEWTGVSGAKMLSHVRDLLHDNGFQIGNAAVQVIGNRPKVGPRRAEAQELLSGLIGAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA  +V
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAPVSV 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_ACIC1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=ispF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 677
            RVG G D+H   P  PL + G++ P E G   HSD DV++H + +A+L A GL D+G  F  ++P+W+ A  +  + E VRL+ +AGY +GN    L+ +RPKL   +      L+E +GA
Sbjct:    8 RVGIGVDVHPFSPDRPLWLAGLHWPGEPGLAGHSDADVVIHALCNALLSAAGLGDLGTQFGTAEPEWRDAAGTRLLTETVRLVRDAGYAVGNAAVQLLGERPKLRERRTEAEQLLTETVGA 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PLAFX (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate HB3) GN=ISPF PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.079e-20
Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  315 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q PK+S  ++ I  N+S +L  D + ++
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNIDESQIS 209          

HSP 2 Score: 25.7942 bits (55), Expect = 8.079e-20
Identity = 11/28 (39.29%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVILLMKK 781
            + +THEK+  +GE ++I     ILL+ K
Sbjct:  211 KGKTHEKLGVIGEKKAIECFANILLIPK 238          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PLAF7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Plasmodium falciparum (isolate 3D7) GN=ISPF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.079e-20
Identity = 52/146 (35.62%), Postives = 84/146 (57.53%), Query Frame = 3
Query:  315 RVGHGFDLHR---LEPGY----------------PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G+D+H+   L+  Y                 L +GG+ + +     +HSDGD++ H +VD+ILGALG  DIG +FPD D K K   S++F++ A  L+ +  Y+IGN+D  +I Q PK+S  ++ I  N+S +L  D + ++
Sbjct:   65 RIGQGYDIHKIKVLDEEYNTYANNDFNKNEQSFKTLTLGGVKINNVLVL-SHSDGDIIYHSIVDSILGALGSLDIGTLFPDKDEKNKNKNSAIFLRYARLLIYKKNYDIGNVDINVIAQVPKISNIRKNIIKNISTVLNIDESQIS 209          

HSP 2 Score: 25.7942 bits (55), Expect = 8.079e-20
Identity = 11/28 (39.29%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVILLMKK 781
            + +THEK+  +GE ++I     ILL+ K
Sbjct:  211 KGKTHEKLGVIGEKKAIECFANILLIPK 238          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.028e-20
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTV 689
            RVG   D H++EPG P  + G+      GCE HSDGDV+ H +VDA+L A GL D+G        ++ G      I E  +L+ E G+ IGN+ A +I  RPK+ P +E     L+EL+GA  +V
Sbjct:    8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMIGNRPKMGPRREEAERRLTELVGAPVSV 132          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PSYCK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Psychrobacter cryohalolentis (strain K5) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 49/126 (38.89%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  315 RVGHGFDLHRL----EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            ++G G D+H      +    +++ G+ + H     AHSDGDV+LH + DA+LGAL L DIGQ FPD+D    G  S V ++     +  AGY +GN D T++ +RPKL+P+   +R N++  L  D
Sbjct:    5 KIGQGIDVHAFHNNGQQQQYVVLAGVPIDHTHSLLAHSDGDVVLHALADALLGALALGDIGQHFPDTDAANAGLDSRVLLRYVYGKVLAAGYILGNADITVMCERPKLAPHNLAMRANIASDLQTD 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.540e-19
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 677
            R G G D+H ++   PL + G++ P E G   HSDGD + H + DA+L A GL DIG IF   DP+  GA   VF++    L+ +AGY I N+   ++  RPKLSP +      LS  +GA
Sbjct:  258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGA 378          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_RHOE46.912e-2038.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCPA6.912e-2038.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA96.912e-2039.202-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_MYCA16.912e-2038.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACIC16.912e-2039.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAFX8.079e-2035.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PLAF78.079e-2035.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORU79.028e-2040.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSYCK1.179e-1938.892-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CLAM31.540e-1941.32Bifunctional enzyme ispD/ispF OS=Clavibacter michi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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