EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 61/127 (48.03%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G+D+H+L+    LIIGGI +P+E+G   HSD DVLLH + DAI+GA+G  DIG  FPD+D  +K A S+  + E  R ++  G+++GNLDAT+I ++PK++PY E ++  ++ELL A+P+ VN
Sbjct:    3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHAEPSQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_ERWT9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 63/127 (49.61%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H      PLIIGG+ +P+E+G  AHSDGDV LH + DA+LGA  L DIG++FPD+D  +KGA S   ++EA+R + + GY +GN+D T+I Q PK+ P+   +R N++E LG     VN
Sbjct:    2 RIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDEAYKGADSRELLREALRQIAQKGYRVGNVDVTIIAQAPKMLPHAPQMRINIAEDLGIHMDEVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CLOD6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium difficile (strain 630) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 60/127 (47.24%), Postives = 92/127 (72.44%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+G G+D+H+L     LIIGG+ +PH++G   HSD DVL+H ++D+ILGAL L DIG+ FPD+D ++KGA S   ++    L+   GY+IGN+D+T+I Q PK++PY E++R+N+S++L  D   +N
Sbjct:    2 RIGLGYDVHKLTEDRKLIIGGVEIPHDKGLLGHSDADVLIHAIMDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQSPKMAPYIESMRSNISKVLNTDIDNIN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BACSU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus subtilis GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ + GY +GN+D T+I Q+PK+ PY E +R  ++E L AD + VN
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BACA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 64/128 (50.00%), Postives = 90/128 (70.31%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA G  DIG+ FPD+DP++K A S   ++    ++ E GY +GN+D T+I Q+PK++P+ + +R  ++E L AD + VN
Sbjct:    2 FRIGQGFDVHQLTEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAAGEGDIGKHFPDTDPEFKDADSFKLLQHVWNIVKEKGYVLGNIDCTIIAQKPKMAPHIDAMRKRIAEGLEADVSQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_ALKMQ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 64/127 (50.39%), Postives = 87/127 (68.50%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            RVG G+D+HRL  G  LI+GG+ +PHE+G   HSD DVLLH + DA+LGA+ L DIG+ FPD+D K+KG  S   + E  R++ E  Y   N+DAT+I Q PK++PY E +R N++E+LG     VN
Sbjct:    2 RVGIGYDVHRLVEGRKLIVGGVEIPHEKGLLGHSDADVLLHAIKDALLGAVALGDIGKHFPDTDEKYKGESSLYLLNEVGRMLAEKAYVANNIDATIIAQEPKMAPYIELMRRNIAEVLGIKVEQVN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_THEEB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            +  R+G+G+D+HRL P  PLI+GGI + H  G   HSD DVL H ++DA+LGAL L DIG  FP SDP+W GA S V + +   L+ E G+ +GN+DA ++ +RPKL PY + +R  L+  LG D
Sbjct:    2 MKIRIGNGYDIHRLVPERPLILGGIRLEHACGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPSDPQWAGADSQVLLAKVAALIAERGWRVGNIDAVVVAERPKLKPYLDPMRDRLATTLGID 126          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHEPA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 65/130 (50.00%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +  R+GHGFD+H+     PLI+GGI VP+E G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY + NLD T+I Q PK++P+ E IR  L+E L ++   +N
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGITVPYEVGLIAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYKLAMDMGYSLSNLDVTVIAQAPKMAPHIEAIRAVLAEDLASEICDIN 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 64/127 (50.39%), Postives = 88/127 (69.29%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q PK+ P+ + IR  LS  L +D   +N
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAIN 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=ispF PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 62/130 (47.69%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  LG     VN
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECAARVAQAGFSIRNVDSTIIAQAPKLAPHIDAMRANIAADLGLPLDRVN 130          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_LISIN1.754e-3148.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ERWT91.754e-3149.612-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOD61.754e-3147.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSU1.754e-3150.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACA21.754e-3150.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ALKMQ1.754e-3150.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_THEEB2.290e-3148.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEPA2.290e-3150.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP2.290e-3150.392-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURTA2.290e-3147.692-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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