EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_PORG3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.991e-31
Identity = 59/121 (48.76%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  309 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELL 671
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +  A+ L+   GYE+GN+DAT+  ++PKL+P+   ++  L+E++
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARAMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVI 124          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_GEOLS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.991e-31
Identity = 61/127 (48.03%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            R+GHG+D+HRL     LI+GG+++P E+G   HSD DVLLH + DA+LGAL + DIG+ FPD+DP +KGA S   ++  V L+   GY +GNLDAT+I QRPK++P+ + +R N++   G +   +N
Sbjct:    2 RIGHGYDVHRLVEDRKLIMGGVDIPWEKGLLGHSDADVLLHAIADALLGALAMGDIGKHFPDTDPAFKGADSMKLLEHVVGLIRTQGYAVGNLDATIIAQRPKMAPHIQAMRENVARACGVEVDRIN 128          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_DECAR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dechloromonas aromatica (strain RCB) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.991e-31
Identity = 64/128 (50.00%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FRVG G+D+H+L  G  LI+GG+ +PH  G   HSD D LLH + DA+LGA+ L DIG+ FPD+DP++KGA S V ++ AV L+ E G+   N+DATLI Q+PKL+P+   +  N++  LG  P  VN
Sbjct:    3 FRVGQGYDVHKLVDGRKLILGGVEIPHPTGLLGHSDADALLHAITDALLGAVALGDIGRHFPDTDPRYKGADSRVLLRAAVALLAERGWRPVNVDATLIAQQPKLAPHAVAMVANVAADLGISPDCVN 130          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CALS8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.991e-31
Identity = 60/128 (46.88%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            F+VG GFD+HR      LI+GG+ +P E+G   HSD DVL+H ++DAILGA+G  DIG++FPD+D K+K   S V +KE  +L+   G  I N+D T++ Q+PK+SPY + ++TN+++ L  + T VN
Sbjct:    2 FKVGFGFDVHRFSEDRKLILGGVEIPFEKGLLGHSDADVLIHAIIDAILGAMGENDIGRLFPDTDMKYKDISSIVLLKEVSKLLKNKGMSIINIDTTIVAQKPKISPYTDEMKTNIAKALNIEKTQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 64/128 (50.00%), Postives = 88/128 (68.75%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L  + GY + N D T+I Q+PKL+PY E +R  ++ LL A+ + VN
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAERSQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_CUPTR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 65/122 (53.28%), Postives = 86/122 (70.49%), Query Frame = 3
Query:  306 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 665
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S   ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRALLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAE 123          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_AZOSE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Azoarcus sp. (strain EbN1) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.960e-31
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 3
Query:  309 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            PFR+G GFD+H L PG  LI+GG+++P ERG   HSD DVLLH + DA+LGA GL DIG++FPD+D    GA S V ++EA   +  AG+ + N+DAT+I + P++ P+   +  N++  LG D   VN
Sbjct:    4 PFRIGQGFDVHALVPGRALIVGGVHIPFERGLLGHSDADVLLHALTDALLGAAGLGDIGRLFPDTDAAHAGADSRVLLREAFAAVRAAGFGVVNVDATVICRAPRILPHAPAMVANIAADLGIDAAAVN 132          

HSP 2 Score: 23.0978 bits (48), Expect = 4.960e-31
Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  698 ESETHEKVDSLGENRSIAAHTVILLMK 778
            + +T EK+   G    IAA  V LLM+
Sbjct:  134 KGKTTEKLGFTGRGEGIAAQVVALLMR 160          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_SYMTH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Symbiobacterium thermophilum GN=ispF PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.971e-31
Identity = 59/126 (46.83%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  318 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            +G G+D+HRL PG PL++GG+ +P +RG E HSD DV LH ++DA+LGA GL DIG  FP +DP W GA S   ++  V L+ E GY   N D T++ +RPK+ PY   +R  +  +LG +P  V+
Sbjct:    3 IGFGYDVHRLVPGRPLVLGGVEIPSKRGLEGHSDADVALHALMDALLGAAGLGDIGTHFPPTDPAWAGANSLDLLRRVVGLLAEEGYRPVNCDITVVAERPKIGPYVPAMRERIGAVLGVEPRRVS 128          

HSP 2 Score: 23.8682 bits (50), Expect = 4.971e-31
Identity = 10/31 (32.26%), Postives = 18/31 (58.06%), Query Frame = 2
Query:  680 PHRCKSESETHEKVDSLGENRSIAAHTVILL 772
            P R   ++ T+E++  +G    IAA+ V L+
Sbjct:  124 PRRVSIKATTNEQMGFVGREEGIAAYAVALI 154          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa GN=ispF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.103e-31
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            L  R+G G+D+H   PG  +++GG+ VPH  G  AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++    L+ E  + +GN+DAT I + PK++PY   +R  ++ LL   P  V+
Sbjct:   13 LNVRIGQGYDVHAFGPGDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCHLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQPECVS 142          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_DESAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=ispF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.103e-31
Identity = 61/127 (48.03%), Postives = 90/127 (70.87%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            RVG+G+D+HRL  G PL++GG+ +P ++G + HSD DVLLH V DA+LGA GL DIG  FPD DPK+K   S+  ++E  R + + GY+I NLDATL+ + PK+ PY++ + + +++ LG +   VN
Sbjct:    2 RVGYGYDVHRLVDGRPLVLGGVTIPFDKGLKGHSDADVLLHAVCDALLGAAGLGDIGMHFPDKDPKYKNIASTRLLEETGRKIAQEGYKIVNLDATLVAEAPKIGPYRQEMVSVIAKCLGLENRQVN 128          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PORG32.991e-3148.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOLS2.991e-3148.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DECAR2.991e-3150.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CALS82.991e-3146.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOKA3.907e-3150.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CUPTR3.907e-3153.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_AZOSE4.960e-3148.062-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SYMTH4.971e-3146.832-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_XYLFA5.103e-3148.462-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_DESAA5.103e-3148.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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