EY660988

Overview
NameEY660988
Unique NameEY660988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=ispF PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURP0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURMS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei (strain SAVP1) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURMA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURM9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei (strain NCTC 10229) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_BURM7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia mallei (strain NCTC 10247) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 58/119 (48.74%), Postives = 86/119 (72.27%), Query Frame = 3
Query:  306 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLS 662
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIA 119          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_ANATD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 3
Query:  312 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVN 695
            F+VG G+D+HR   G  LI+GG+ +P E+G   HSD DVL+H ++DAILGA+G  DIG++FPDS P +K   S V +KE  +L++E   +I N+D+T++ QRPK+SPY   ++  +++ L  + T VN
Sbjct:    2 FKVGIGYDVHRFVEGRKLILGGVEIPFEKGLLGHSDADVLVHAIIDAILGAMGENDIGRLFPDSSPNYKDISSLVLLKEVAKLLEEKNMKIVNIDSTVVSQRPKISPYTNEMKNKIADCLKIESTQVN 129          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPDF_SILST (Bifunctional enzyme ispD/ispF OS=Silicibacter sp. (strain TM1040) GN=ispDF PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 57/122 (46.72%), Postives = 85/122 (69.67%), Query Frame = 3
Query:  315 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGAD 680
            R+G+G+D+HR  PG  +++ G+ VPHERG + HSD DV +H V DA+ GA+   DIG+ FP SDP+WKGA S +F++ AV L    G+ I N+D TL+ + PK+ P+ E +R  ++E++G D
Sbjct:  227 RLGNGYDVHRFGPGDHVMLCGVQVPHERGLQGHSDADVGMHAVTDALYGAMAEGDIGRHFPPSDPQWKGAASDIFLRHAVELARSKGFTINNVDCTLVCEYPKVGPHAEAMRARMAEIMGMD 348          
BLAST of EY660988 vs. ExPASy Swiss-Prot
Match: ISPF_YERPB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ispF PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.939e-30
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  315 RVGHGFDLHRL-EPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSE 665
            R+GHGFD+H+  E G  PLIIGG+ +P+E+G  AHSDGDV LH   DA+LGA  L DIG++FPD+DP +KGA S   ++EA R +   GY++GNLD T+I Q PK++P+   +R NL+E
Sbjct:    2 RIGHGFDVHKFGENGSGPLIIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAYRCILAKGYKLGNLDITIIAQAPKMAPHIPQMRVNLAE 120          
The following BLAST results are available for this feature:
BLAST of EY660988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_BURP61.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP11.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP01.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURMS1.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURMA1.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURM91.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURM71.485e-3048.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ANATD1.485e-3046.092-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_SILST1.485e-3046.72Bifunctional enzyme ispD/ispF OS=Silicibacter sp. ... [more]
ISPF_YERPB1.939e-3053.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660988 ID=EY660988; Name=EY660988; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGGATACATATCGAGCAGACAGCAGAGCACGAACAGCGTCT
CTCCTCTCTTCGTAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATA
CACCACCACTCCTCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTC
CTCCGTTGAGTTTGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACA
ACACAGTCAACGTCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTC
TTCCATCGAAGTTAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAA
AATCACTGCCTTTTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAG
CCTGGCTACCCTCTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGG
CTGCGAGGCTCACTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATG
CAATTTTGGGAGCATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGAT
TCTGATCCTAAGTGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGC
TGTGAGACTCATGGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCA
CGCTGATTCTTCAAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGA
ACCAACTTGTCTGAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAA
AGCGAAACTCATGAAAAAGTTGATAGCCTTGGTGAAAATCGAAGTATTGC
AGCTCACACTGTGATCCTTCTCATGAAGAAAGTAAATAAACGATTTGGGA
ATTTGTCTAATGTAGGCAGTGGATCCTATTATCNATGGTGNATTTGTATT
CTGGCTACAAGACTATCCACTGGTATAGATTCCAATGATAGTTTNNGTTC
TACTTGAACATGGCTC
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