EY660987

Overview
NameEY660987
Unique NameEY660987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.612e-41
Identity = 79/128 (61.72%), Postives = 90/128 (70.31%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF--TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            L+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA PTINSQGNR+ AP   + KEVTK  D   SQW+ WNWRSEGDL+LNGAYF  T                  + SS+VGSIT+ AG + C+K  +C
Sbjct:  277 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.473e-40
Identity = 77/126 (61.11%), Postives = 88/126 (69.84%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            L+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA+PTI SQGNR+ AP   F KEVTK  +   S+WK WNWRSEGDL+LNGAYF                   + S++V S+T  AGAL CRK  +C
Sbjct:  276 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.247e-39
Identity = 77/128 (60.16%), Postives = 90/128 (70.31%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFT--PXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            L+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR+ AP ++ +KEVTK  D    +W+ WNWRSEGDLLLNGA+FT                    + SS VG IT  +GAL+C++   C
Sbjct:  305 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKRGSHC 432          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.012e-38
Identity = 74/118 (62.71%), Postives = 82/118 (69.49%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGAL 365
            LIQRMPRCR GY HVVNND+T WEMYAIGGS NPTINSQGNRY AP N FAKEVTKRV+T    WKGWNWRSEGD+L+NGA+F                   KS+S +  IT  +G L
Sbjct:  297 LIQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVL 414          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.628e-33
Identity = 66/117 (56.41%), Postives = 80/117 (68.38%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTA-ASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAG 359
            L+QRMPRCR GY HVVNND+T W+MYAIGGS NPTINSQGNRY+AP +  AKEVTKRVD+    +W  WNWR+EGDL+ NGA+F                   K++S+V  +T  AG
Sbjct:  294 LVQRMPRCRRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAG 410          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.132e-31
Identity = 68/132 (51.52%), Postives = 78/132 (59.09%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF------TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            L QRMPRCR+G  HVVNNDYTHWEMYAIGG+ NPTI SQGNR+ AP N  AK++TKR  T   +WK WNW+SEGD  LNGAYF                         K  +MV  +T  AG L C+    C
Sbjct:  328 LEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCKLGEAC 459          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.058e-30
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 3
Query:    6 RPLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            R L+QRMPRCR+G+ HVVNNDYTHW MYA+GGS +PTI SQGNRY AP    AKEVTKR     ++W  W W+S+GDL ++GA+F                   K  + V  +T  +GAL C+++ +C
Sbjct:  307 RGLVQRMPRCRYGFVHVVNNDYTHWIMYAVGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFENKYSKKDLIKAKPGTFVQRLTRFSGALNCKENMEC 434          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.805e-30
Identity = 63/127 (49.61%), Postives = 79/127 (62.20%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDT-AASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 389
            L+QRMPRCRHGYFH+VNN Y  W+MYAIGGSANPTI SQGN + A  N F KEVTKR       +WK WNW+SEGD ++NGA+FTP                 + +S++ +     G L+C   + C
Sbjct:  266 LVQRMPRCRHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSCEIDQAC 392          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.446e-29
Identity = 65/128 (50.78%), Postives = 76/128 (59.38%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSM--VGSITSGAGALTCRKSRQC 389
            LIQRMPRCR GY HVVNNDYTHW MYAIGGS +PTI  QGNR+ AP + F K+VTKR     S W  W WRSEG+L +NGAYFT                   ++    V  +T  AG L C+  + C
Sbjct:  322 LIQRMPRCRWGYIHVVNNDYTHWNMYAIGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFTESGDPEWSSKHKDLYDGISAAPAEDVTWMTRFAGVLGCKPGKPC 449          
BLAST of EY660987 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.868e-27
Identity = 63/128 (49.22%), Postives = 76/128 (59.38%), Query Frame = 3
Query:   12 LIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLN-AFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSM-VGSITSGAGALTCRKSRQC 389
            L+QRMPR R G+ HVVNNDYTHWE+YAIGGS  PTI S GNR+ AP +    +EVTKR   + S+WK WNWRSE D+ +N AYF                     + M V  +T  AGAL CR  + C
Sbjct:  348 LVQRMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475          
The following BLAST results are available for this feature:
BLAST of EY660987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL18_SOLLC6.612e-4161.72Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL_ZINEL1.473e-4061.11Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL22_ARATH1.247e-3960.16Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH4.012e-3862.71Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH6.628e-3356.41Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL3_ARATH2.132e-3151.52Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL_LILLO1.058e-3048.44Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL21_ARATH1.805e-3049.61Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL59_SOLLC4.446e-2950.78Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL7_ARATH1.868e-2749.22Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660987 ID=EY660987; Name=EY660987; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCTCATTCAGAGAATGCCAAGGTGTAGACATGGTTATTTC
CATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGG
AAGTGCAAACCCCACCATCAACAGCCAGGGAAACAGATACAATGCTCCAT
TGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGGACACAGCTGCAAGC
CAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGACCTCTTGCTGAACGG
TGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGCTAGCTATGCTCGTG
CTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGTTGGATCCATTACTTCT
GGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAGTGCTCATAGTATTC
ATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGAATTTCTGTTTTGTT
TTTCATTTTTCTTCTATATAGTATATCACCTATCCAATTTATCCACAATC
TGGTCATTGTTTCAATCTCTACCGTATATCTGCTTCACATATTTTGACAA
GTGTACATTATTGCACATGTCATTGTATTGCCTCACCCAGTTTGTTTATC
AGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAAAACAAACATTTGCA
TTCCCAGAAGCAGGTGCGGAAGTGTTGTTCATTTTATTTTCCCTCTTTGG
CCTCTTTTTTCAGCCTCATTTCTCATTTCCTTCTAACTAGCACTTGCCTA
TTTGTGTCCAGTGTCAGTCAGCTGTCAACTGTCAATCTTGGCCTCTCTAC
ATACTCTNCTTTTCATTTTTGGCTTTGGGTTAAAAGGTCCGGATGATTTT
GTGCTTTTTCTCCCCGCTCCTTTGT
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