EY660964

Overview
NameEY660964
Unique NameEY660964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660964 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.825e-12
Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 3
Query:  180 IPIIDFGLLTSPSSSAQELEKLRSALCSWGCFQAINHGVEPAFLNKVREATKQFFALPLAEKKKYYQEDGSFEGYGNDKMQT---LLWSHLLYLTVHPEDKRQLKFWPENPEYFRETLDEISKKLEVINQILLKAFARSLNME-ENCFLDM-FGEQALMLARFNWYPPCPRPDL----VLGVFPHSDGSGLTVLLPDKEVGGLQFLKDNQWYSVPVISRSFXGNIGDQLEIISMG 857
            IP++D   L+ P +    ++    A   +G F+ INHG+    ++++     +FF+LP  EK+K    +    GYGN ++     + W   L LT + +    L  + E+ + FR  L +    +  +   +L   A  L ++ +N F  +   +Q+  L R N YP CP   +    ++G   H+D   +++L  +   G    L+D  W SVP    SF  N+GD L++++ G
Sbjct:   27 IPLVD---LSKPDAKTLIVK----ACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEKAGPANPF--GYGNKRIGLNGDIGWIEYLLLTTNQDHNFSL--YGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNG 250          
BLAST of EY660964 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 68/252 (26.98%), Postives = 108/252 (42.86%), Query Frame = 3
Query:  138 SDAGTFDASLPPLEIPIIDFGLLTSPSSSAQE--LEKLRSALCSWGCFQAINHGVEPAFLNKVREATKQFFALPLAEKKKYYQEDGSFEGY--GNDKMQTLLWS------HLLYLTVH--PEDKRQLKFWPENPEYFRETLDEISKKLEVINQILLKAFARSLNMEENCFLDMFGEQALMLARFNWYPPCPRPDLVLGVFPHSDGSGLTVLLPDKEVGGLQFLKDNQWYSVPVISRSFXGNIGDQLEIISMG 857
            S+  T       +++P+ID   LTS     ++  ++++ +A   WG FQ +NHG+       +    K+ F  P + K +    D S   Y  GN    +          H++   V    +D+  L+   E        + EI++  ++I +IL K    S    EN F     E      R N Y P      V G+ PH+D S LT+L  D ++GGL+   + QW SV     +   NIGD  + +S G
Sbjct:   26 SNTNTSTIQTSGIKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQYSVSEAFHIILSEVSRISDDRNNLRTIVET------YVQEIARVAQMICEILGKQVNVSSEYFENIF-----ELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQD-QIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNG 265          
The following BLAST results are available for this feature:
BLAST of EY660964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
G2OX1_PEA1.825e-1226.81Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX7_ARATH3.113e-1226.98Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-027-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660964 ID=EY660964; Name=EY660964; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGAACTGCTCTCGGCAAACACCATGGCTGAAACCACATCTC
CTGCTAAATTGGAAGCACCAACGGAAACACCACAAGAACTCATCATTAGC
GGCAAAGAAAGCATTAGAAAATTACATCCAAAAAGGCAGTGATGCTGGAA
CTTTTGATGCATCTCTGCCACCTCTGGAAATTCCAATAATTGATTTTGGC
CTCTTGACATCTCCTTCATCCAGCGCACAGGAACTTGAGAAACTGCGCTC
AGCTCTCTGCTCCTGGGGCTGCTTCCAGGCAATCAATCATGGAGTAGAAC
CTGCATTCTTGAACAAGGTGCGTGAAGCTACCAAGCAGTTCTTTGCTCTC
CCTCTGGCGGAGAAGAAGAAATATTACCAAGAAGATGGTAGCTTTGAAGG
CTATGGGAATGACAAGATGCAGACACTCCTTTGGAGTCATCTATTGTACC
TTACGGTGCATCCAGAAGATAAAAGACAACTGAAATTCTGGCCTGAAAAC
CCCGAATATTTTAGGGAAACTTTAGATGAAATTTCCAAGAAATTAGAAGT
GATAAATCAAATCCTCCTCAAGGCCTTCGCGAGGTCGTTAAACATGGAAG
AGAATTGCTTTTTGGACATGTTTGGAGAACAAGCATTAATGCTTGCTCGA
TTCAACTGGTACCCTCCATGTCCGAGGCCTGATCTGGTTCTTGGTGTCTT
CCCTCACTCCGATGGATCAGGACTGACAGTGCTCTTGCCAGACAAAGAAG
TTGGAGGTCTTCAATTCCTCAAGGACAATCAATGGTACAGCGTACCAGTC
ATTTCCCGAAGCTTTGNTGGTAACATTGGTGATCAGCTAGAGATAATAAG
TATGGGATATTCACGAGCCCCGTACACGAGTGTTGACAAATCAGAAAGGG
AAGATTTCTTGGCTATGTTCTA
back to top