EY660921

Overview
NameEY660921
Unique NameEY660921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 62/198 (31.31%), Postives = 89/198 (44.95%), Query Frame = 3
Query:  267 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL-------DLGKMDEANDSG 839
            +Y A A+ KLP  +F Y   GA  + TL+ N    S I  R R+L ++S++D++T   G K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV KD              G   +  TVD P  G    D  +  + P     +  QA+       D+G M + +D G
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNGPLRRVLQAMTHPQWAWDVGVMGKPHDLG 205          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.000e-15
Identity = 59/198 (29.80%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  267 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL-------DLGKMDEANDSG 839
            +Y A A+ KLP  +F Y   GA  + TL+ N    + I  R RIL ++S + + T+  G K++MP+++ P  +  M    GE          G   TLS+ S   +EEVA       +FQLYV KD              G K +  TVD P  G    D  +  + P     +  QA+       D+G   + +D G
Sbjct:    8 DYRAAAQAKLPPFLFHYIDGGAYAEHTLRRNTEDLAGIALRQRILRNMSDLSLETSLFGEKLAMPVILGPVGLTGMYARRGEVQAAKAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRDAHSGMSGPNAAVRRMLQAVTHPQWAWDVGLCGKPHDLG 205          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.000e-15
Identity = 59/198 (29.80%), Postives = 87/198 (43.94%), Query Frame = 3
Query:  267 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL-------DLGKMDEANDSG 839
            +Y A A+ +LP  +F Y   GA  + TL+ N    + I  R RIL ++S + + T   G K++MP+++AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV KD              G K +  TVD P  G    D  +  + P     +  QA+       D+G   + +D G
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYGEHTLRRNTADLADIALRQRILKNMSDLSLETQLFGEKLAMPVVLAPVGLTGMYARRGEVQAARAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRSALERAQAAGVKTLVFTVDMPTPGARYRDAHSGMSGPNAAARRMLQAVTHPQWAWDVGLNGKPHDLG 205          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_ESCF3 (L-lactate dehydrogenase [cytochrome] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.706e-15
Identity = 55/184 (29.89%), Postives = 83/184 (45.11%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL 803
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S++  R R+L ++S + + TT    K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLYV +D              G   +  TVD P  G    D  +  + P     + +QA+
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAGAADAHGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYWQAV 186          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_AZOC5 (L-lactate dehydrogenase [cytochrome] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.706e-15
Identity = 60/203 (29.56%), Postives = 90/203 (44.33%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQ-------ALDLGKMDEANDSG 839
            I++  +Y A AK +LP  +F Y   GA  ++TL+ N    S I  R ++L +V+ + + T   G K++MP+ +AP  +  M    GE          G   TLS+ S   +EEV S      +FQLYV KD              G   +  TVD P  G    D  +  +     T +  Q       ALD+G + + +D G
Sbjct:    3 ISSPNDYRAAAKSRLPPFLFHYVDGGAYAEYTLRRNVEDLSHIALRQQVLRNVADLSLETELFGQKLTMPVALAPVGLTGMLARRGEVQAAKAAQAKGVPFTLSTVSVCPIEEVQSQCAKPIWFQLYVLKDRGFMRNALERAQAAGINTLIFTVDMPVPGARYRDAHSGMSGRSGPTRRVLQAMVHPRWALDVGLLGKPHDLG 205          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_CITK8 (L-lactate dehydrogenase [cytochrome] OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-15
Identity = 55/183 (30.05%), Postives = 81/183 (44.26%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQA 800
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R R+L ++S + + TT    K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLYV +D              G   +  TVD P  G    D  +  + P     + +QA
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYIDGGAYAEYTLRRNVEDLSEVALRQRVLKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAALRRYWQA 185          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 54/184 (29.35%), Postives = 82/184 (44.57%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL 803
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S++  R R+L ++S + + TT     + MP+ +AP  +  M    GE          G   TLS+ S   +EEVA T     +FQLYV +D              G   +  TVD P  G    D  +  + P    L+ +QA+
Sbjct:    3 ISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLPMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMLRYWQAV 186          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.963e-15
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL 803
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT    K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV +D              G   +  TVD P  G    D  +  + P     +  QA+
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAV 186          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.963e-15
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL 803
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT    K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV +D              G   +  TVD P  G    D  +  + P     +  QA+
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAV 186          
BLAST of EY660921 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.963e-15
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = 3
Query:  252 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTDLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDXXXXXXXXXXXXXXGFKAVALTVDTPRLGRIETDIKNRFTLPPLLTLKNFQAL 803
            I+   +Y A A+  LP  +F Y   GA  ++TL+ N    S +  R RIL ++S + + TT    K+SMP+ +AP  +  M    GE          G   TLS+ S   +EEVA       +FQLYV +D              G   +  TVD P  G    D  +  + P     +  QA+
Sbjct:    3 ISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAV 186          
The following BLAST results are available for this feature:
BLAST of EY660921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
LLDD_PSEMY7.656e-1631.31L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SERP51.000e-1529.80L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_ERWCT1.000e-1529.80L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_ESCF31.706e-1529.89L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_AZOC51.706e-1529.56L-lactate dehydrogenase [cytochrome] OS=Azorhizobi... [more]
LLDD_CITK82.909e-1530.05L-lactate dehydrogenase [cytochrome] OS=Citrobacte... [more]
LLDD_SALCH3.800e-1529.35L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SHISS4.963e-1529.89L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL4.963e-1529.89L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF84.963e-1529.89L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-027-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660921 ID=EY660921; Name=EY660921; organism=Citrus sinensis; type=EST; length=896bp
TGCCTCGACCCACGCGTCCGATTTTTTTTTTCGTCTTATAATTCAATCAG
CCCCCTTGTTTTGTCTCCATGAAAACTTATATCTATTTTATTTTCTCTTT
GCTTTCTATTTCTTAAATCTCCCTCTATAACTCAGTCTTTGTTCATCATC
GTCTTCTCTCTACTGGTTTCTCTGAATGCACTTTGCTGCACTGTCTTTGT
AAACCTTAGATTAATTTAAGTAGAAAACAGTCAACTGACAAGATGGGAGA
GATCACAAATGTGATGGAGTATGAGGCCATTGCCAAGGAAAAGTTGCCAA
AGATGGTGTTTGATTACTATGCTTCAGGTGCAGAGGACCAGTGGACTTTG
CAAGAGAACAGGAATGCTTTCTCAAGAATCCTGTTTCGACCTCGCATTCT
GATTGATGTAAGCAAAATAGACATGAATACCACTGACTTGGGCTTCAAGA
TATCGATGCCAATCATGATTGCCCCAACAGCCATGCAGAAGATGGCTCAT
CCTGAAGGGGAGTATGCTACAGCTAGAGCTGCATCGGCTGCTGGAACGAT
TATGACATTGTCTTCGTGGTCTACTTCTAGCGTTGAAGAGGTTGCTTCAA
CAGGACCTGGCATCCGCTTTTTCCAGCTCTATGTGTACAAGGACAGGAAT
GTGGTTGCTCAGCTTGTGAGAAGGGCTGTAAGAGCCGGATTCAAGGCCGT
TGCTCTAACAGTTGATACCCCGAGGCTGGGTCGCATAGAAACTGACATCA
AGAACAGATTCACTCTACCACCATTATTGACATTAAAGAATTTTCAGGCT
TTGGACCTTGGCAAGATGGACGAGGCAAATGACTCTGGGCTTGGCTGCTT
GTTGCTGGTCAAATGATCGTTCTCTGACTTGAAAGACTTGAAGTGC
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