EY660909 | Citrus Genome Database

Overview


Name	EY660909
Unique Name	EY660909
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	834

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1D_RAT (Casein kinase I isoform delta OS=Rattus norvegicus GN=Csnk1d PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1D_PONAB (Casein kinase I isoform delta OS=Pongo abelii GN=CSNK1D PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1D_MOUSE (Casein kinase I isoform delta OS=Mus musculus GN=Csnk1d PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1D_HUMAN (Casein kinase I isoform delta OS=Homo sapiens GN=CSNK1D PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1D_BOVIN (Casein kinase I isoform delta OS=Bos taurus GN=CSNK1D PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1DB_DANRE (Casein kinase I isoform delta-B OS=Danio rerio GN=csnk1db PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1DA_DANRE (Casein kinase I isoform delta-A OS=Danio rerio GN=csnk1da PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1E_MOUSE (Casein kinase I isoform epsilon OS=Mus musculus GN=Csnk1e PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.307e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1E_HUMAN (Casein kinase I isoform epsilon OS=Homo sapiens GN=CSNK1E PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.307e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

BLAST of EY660909 vs. ExPASy Swiss-Prot
Match: KC1E_CHICK (Casein kinase I isoform epsilon OS=Gallus gallus GN=CSNK1E PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.307e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1

Query:   73 AFPGND*KLAQKSKNMIRAAKRRCQLRI*VLCMSYPSESVSYFHY*PSLRDEDKPDYSYLNRLFRD*FIREGSQIDYACDWTVLKY 330
            + P    K A K +   R ++++    I VLC  YPSE  +Y ++  SLR +DKPDYSYL +LFR+ F R+G   DY  DW +LK+
Sbjct:  210 SLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKF 295

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 3

Query:   12 QSRFDDLQSLGYALMYFLIGSLPWQ*LKAGTKEQKYDKSCEEKVSTP 152
            QSR DDL+SLGY LMYF +GSLPWQ LKA TK QKY++  E+K+STP
Sbjct:  190 QSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 236

The following BLAST results are available for this feature:

BLAST of EY660909 vs. ExPASy Swiss-Prot

BLAST of EY660909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33


Match Name	E-value	Identity	Description
KC1D_RAT	5.456e-13	43.02	Casein kinase I isoform delta OS=Rattus norvegicus...	[more]
KC1D_PONAB	5.456e-13	43.02	Casein kinase I isoform delta OS=Pongo abelii GN=C...	[more]
KC1D_MOUSE	5.456e-13	43.02	Casein kinase I isoform delta OS=Mus musculus GN=C...	[more]
KC1D_HUMAN	5.456e-13	43.02	Casein kinase I isoform delta OS=Homo sapiens GN=C...	[more]
KC1D_BOVIN	5.456e-13	43.02	Casein kinase I isoform delta OS=Bos taurus GN=CSN...	[more]
KC1DB_DANRE	5.456e-13	43.02	Casein kinase I isoform delta-B OS=Danio rerio GN=...	[more]
KC1DA_DANRE	5.456e-13	43.02	Casein kinase I isoform delta-A OS=Danio rerio GN=...	[more]
KC1E_MOUSE	9.307e-13	43.02	Casein kinase I isoform epsilon OS=Mus musculus GN...	[more]
KC1E_HUMAN	9.307e-13	43.02	Casein kinase I isoform epsilon OS=Homo sapiens GN...	[more]
KC1E_CHICK	9.307e-13	43.02	Casein kinase I isoform epsilon OS=Gallus gallus G...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-027-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY660909 ID=EY660909; Name=EY660909; organism=Citrus sinensis; type=EST; length=834bp
CCACGCGTCCGCAAAGCCGTTTCGATGATTTACAGTCTCTTGGTTATGCC
CTTATGTATTTCCTTATAGGAAGCCTTCCCTGGCAATGATTAAAAGCTGG
CACAAAAGAGCAAAAATATGATAAGAGCTGCGAAGAGAAGGTGTCAACTC
CGGATATAGGTGCTCTGTATGTCATACCCATCTGAGTCTGTATCATACTT
TCATTACTGACCATCGTTGCGGGATGAGGACAAACCAGATTATTCTTATT
TAAATAGGCTTTTCCGCGACTAATTTATTCGAGAAGGTTCTCAGATTGAC
TATGCATGTGATTGGACTGTATTAAAGTACCCTCACATGGGTTCCTCCTC
TAGAGGAAGGCATTCCAACTGAGAAGGAACGGTTAACCCCACGACCATCT
GCTGAAAGACCACAAAGGGAGTCATTTGGGAACGAGATTAAGGACAAATT
GTCTGGTGCATTAGATGCATTTCAAGAGAAGATGCTGCTGGTACTCCTCA
TCGCGATCTTCCCATACACAACAGTTCAGATGATGGTCCTTCCTCTGAGG
TGTGAACCCTGATTCTGAAGAACGACTAAGCTATTGCCGGCATGGCAGCA
CTTCAAGATTAGCTGTTATCTCACGCACTATACCTGATACATCTGGAGAA
TTCTGGGAGTGTCTGCTCTATCGACTAGACTCAAACAGTGGCCGCTTGAC
TACCACGCATAGATGGCACTCTGGGTATGATTCCAGTCAAATCTCATTTA
ATCGCGCTGCTGGTGGAAGAGTCTGCACCCATGATGATCCTATTCGGAGT
TCTGAGATGCTGTCAATCAGGCCATGATGTCTAT