EY660737

Overview
NameEY660737
Unique NameEY660737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660737 vs. ExPASy Swiss-Prot
Match: LDH_CLOPE (L-lactate dehydrogenase OS=Clostridium perfringens GN=ldh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  149 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGSH 673
            K++I+GA G +G   A  +  + L S + + D+ N     A+   +  GA     +     + A T   D+VII AGV  KPG TR D+ N N  I +++   + K  PN+I+ ++SNPV+    I   +  K   +  ++++G  T+LD  R    ++E   +D R+V   ++G H
Sbjct:    8 KISIIGA-GFVGSTTAFALMQDGLASEIVIVDI-NKDKAHAEAMDLAQGAAFVKSVDIKSGDYADTKDSDIVIITAGVGPKPGETRLDIINKNLKIFQSIVPEVVKYSPNSILLVVSNPVD----ILTYITYKLSGFPKERVIGSGTVLDTSRLKYMLSEHFDIDARNVHTYIIGEH 178          
BLAST of EY660737 vs. ExPASy Swiss-Prot
Match: LDH_CLOP1 (L-lactate dehydrogenase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ldh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.678e-11
Identity = 53/177 (29.94%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  149 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGSH 673
            K++I+GA G +G   A  +  + L S + + D+ N     A+   +  GA     +     + A T   D+VII AGV  KPG TR D+ N N  I +++   + K  PN+I+ ++SNPV+    I   +  K   +  ++++G  T+LD  R    ++E   +D R+V   ++G H
Sbjct:    8 KISIIGA-GFVGSTTAFALMQDGLASEIVIVDI-NKDKAHAEAMDLAQGAAFVKSVDIKSGDYADTKDSDIVIITAGVGPKPGETRLDIINKNLKIFQSIVPEVVKYSPNSILLVVSNPVD----ILTYITYKLSGFPKERVIGSGTVLDTSRLKYMLSEHFDIDARNVHTYIIGEH 178          
BLAST of EY660737 vs. ExPASy Swiss-Prot
Match: MDH_PROVI (Malate dehydrogenase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 47/178 (26.40%), Postives = 88/178 (49.44%), Query Frame = 2
Query:  149 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGSH 673
            K+ ++GA G +G   A+ +    L   + L D++     G   D+      A+    +            D+V+I AG+ RKPGM+R+DL   N  I++ +   + +   N I+ ++SNP++    +A  V        P++++G+  +LD  R  +F+AE L +  +D++  V+G H
Sbjct:    2 KITVIGA-GHVGATAALRIAEKQLAREVVLIDIIEGIPQGKALDMYESGPVALFDTMVKGSNDYADSADSDIVLITAGLARKPGMSREDLLMKNTAIIKDVTTQVMRYSVNPILIMVSNPLDVMTFVAHTV----SGLKPERVIGMAGVLDTARFRSFIAEALNVSMQDINAFVLGGH 174          
BLAST of EY660737 vs. ExPASy Swiss-Prot
Match: LDH_SYNJB (L-lactate dehydrogenase OS=Synechococcus sp. GN=ldh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 53/181 (29.28%), Postives = 86/181 (47.51%), Query Frame = 2
Query:  149 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGSH 673
            K +I+GA G +G   A  M I   +  L L+D+      G   D+ H    ++   +  G L          G D+VI+ AG  ++PG TR DL   N  I + L   +   CP+ ++ ++SNPV+    ++    K +G    + +   T+LD  R    +AE LG+DPR +   ++G H
Sbjct:    2 KGSIIGA-GQVGMACAYSMVIQNTLDELVLHDIDRNKLEGEVMDLVHGIPFVEPTRIRAGELAD------CAGSDVVILTAGAKQRPGETRLDLVQRNVEIFKGLIPALMAHCPDTLLLVVSNPVDIMTYVS---LKLSGLPAGQVIGSGTVLDTARFRYLLAERLGVDPRSLHAYIIGEH 172          
BLAST of EY660737 vs. ExPASy Swiss-Prot
Match: MDH_PSEPK (Probable malate dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  341 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGSH 673
            L G +LV+I AGVPRKPG +R D+ + N  I+ ++   I    P A V ++SNPV+    +    +  +G    K      +LD  R   F+AE  G   RD+   V+G H
Sbjct:   37 LEGSELVVITAGVPRKPGQSRQDVLSTNLPILDSIMADIKHHAPTATVLVVSNPVD---VLTYRAWSVSGQGRDKVFGQAGVLDTARMKCFIAEQTGFSARDITALVLGGH 144          
BLAST of EY660737 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 52/198 (26.26%), Postives = 93/198 (46.97%), Query Frame = 2
Query:  149 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNTPGVTADISHMDTGAV------VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV-GSHAGVQFCHFYH 703
            +V + GAAG IG  L  ++    ++      +LH+ D+   P  T  ++ +    V      ++G +    +  A TG+++ ++  G PRK GM R D+ + N  I ++    + A   PN  V +++NP N+   I  E    A +   K +  +T LD  RA   ++E L +   DV   ++ G+H+  Q+    H
Sbjct:    7 RVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDI---PPATESLNGLKMELVDAAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEF---APSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAIIWGNHSSTQYPDVNH 198          
The following BLAST results are available for this feature:
BLAST of EY660737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 386
Match NameE-valueIdentityDescription
LDH_CLOPE5.678e-1129.94L-lactate dehydrogenase OS=Clostridium perfringens... [more]
LDH_CLOP15.678e-1129.94L-lactate dehydrogenase OS=Clostridium perfringens... [more]
MDH_PROVI7.416e-1126.40Malate dehydrogenase OS=Prosthecochloris vibriofor... [more]
LDH_SYNJB7.416e-1129.28L-lactate dehydrogenase OS=Synechococcus sp. GN=ld... [more]
MDH_PSEPK9.685e-1135.14Probable malate dehydrogenase OS=Pseudomonas putid... [more]
MDHC_ORYSJ9.685e-1126.26Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-025-D10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660737 ID=EY660737; Name=EY660737; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCAAAGAAAATGGACTTTAGCTCAGAGGCTAATCAGCGCA
TTGCTAGAATCTCTGCTCATCTTTACCCTCCAAATCTCCAGGAGAATTCT
TGCTTGAGGCAAGCTAAATGCCGGGCAAAAGGCGGGGCAGCTGGATTCAA
AGTAGCCATCTTGGGTGCTGCTGGAGGCATTGGTCAACCCCTTGCAATGC
TAATGAAGATAAACCCCCTGGTCTCAGTCCTTCACCTCTATGATGTTGTC
AATACCCCTGGTGTCACTGCTGATATTAGCCATATGGACACCGGCGCTGT
GGTACGGGGTTTCCTAGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGA
TGGACCTTGTCATTATCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACC
AGGGATGATCTTTTCAATATCAATGCTGGAATTGTCAGGACACTCTGTGA
AGGCATCGCAAAGTGTTGCCCCAATGCGATTGTCAATTTGATCAGTAATC
CAGTGAACTCTACAGTTCCTATTGCCGCAGAGGTTTTCAAGAAAGCTGGT
ACTTATGATCCAAAGAAACTCTTGGGAGTTACAATGCTCGATGTCGTAAG
AGCCAACACATTCGTGGCGGAAGTTTTGGGACTTGATCCTAGGGATGTTG
ATGTTCCTGTTGTTGGAAGTCATGCTGGAGTACAATTTTGCCACTTTTAT
CACAGGTTAAGCCTCCTTGTAGCTTCACTCAAGAAGAAGCTGAATACCTG
ACGAACCGCATACAAAATGGTGGAACAGAAAAGTGTGAGGCAAAAGCTGG
GGCTGGCTCTGCACACTCTCAATGGCTATGCAGCGGNTGAATTGCCGATG
CATGCCTCCCTGGCTGNAAAGAAAGCTGNTGTTGTGAATGTGCAT
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