EY660676

Overview
NameEY660676
Unique NameEY660676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_WHEAT (Photosystem I assembly protein ycf3 OS=Triticum aestivum GN=ycf3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 323
            MPRSR+NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_POPTR (Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_POPAL (Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_PHAAO (Photosystem I assembly protein ycf3 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            MPRSRINGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDG 42          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_SOYBN (Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_PHAVU (Photosystem I assembly protein ycf3 OS=Phaseolus vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_MORIN (Photosystem I assembly protein ycf3 OS=Morus indica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAF YYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFAYYRDG 42          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_SACOF (Photosystem I assembly protein ycf3 OS=Saccharum officinarum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 323
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_LOLPR (Photosystem I assembly protein ycf3 OS=Lolium perenne GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 323
            MPRSR NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRANGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of EY660676 vs. ExPASy Swiss-Prot
Match: YCF3_ILLOL (Photosystem I assembly protein ycf3 OS=Illicium oligandrum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  192 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 317
            M RSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of EY660676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
YCF3_WHEAT1.309e-1486.36Photosystem I assembly protein ycf3 OS=Triticum ae... [more]
YCF3_POPTR1.309e-1492.86Photosystem I assembly protein ycf3 OS=Populus tri... [more]
YCF3_POPAL1.309e-1492.86Photosystem I assembly protein ycf3 OS=Populus alb... [more]
YCF3_PHAAO1.309e-1492.86Photosystem I assembly protein ycf3 OS=Phalaenopsi... [more]
YCF3_SOYBN1.710e-1492.86Photosystem I assembly protein ycf3 OS=Glycine max... [more]
YCF3_PHAVU1.710e-1492.86Photosystem I assembly protein ycf3 OS=Phaseolus v... [more]
YCF3_MORIN1.710e-1492.86Photosystem I assembly protein ycf3 OS=Morus indic... [more]
YCF3_SACOF3.809e-1486.36Photosystem I assembly protein ycf3 OS=Saccharum o... [more]
YCF3_LOLPR3.809e-1486.36Photosystem I assembly protein ycf3 OS=Lolium pere... [more]
YCF3_ILLOL3.809e-1492.86Photosystem I assembly protein ycf3 OS=Illicium ol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-024-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660676 ID=EY660676; Name=EY660676; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTCTGATATTTCTACCTGATTTAATCAATGAGTTGGAACGA
ATCAACGGATCGGTCTATTTTTTTTTTTATTTTTTTTAACACGTCTGCTT
TTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCATTTTCTC
ACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATGCCTAGA
TCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGTAGCCAA
TATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGGCATTTA
CCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCCCTTTCG
GTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAAAAAAGA
TTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTATAGATAAAACCA
TTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGATGCTTCAATTG
TCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTTCTGTATTGCAA
GTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGGGAAGAGGCGCT
ACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAACTGCCCCCTTCC
TTAGCGGGATCGGGACTAAGAAGAATGGTGGGATAACAACATCCATCTCG
TTCGTACTGTGGATACCCGTATACCATCGAAGACTGTTGAAGTGATTAAT
TCCTGTAAATTAGGGGGCGNTGAGAACAANGAAATGTNGNAGTTTCCNGT
TTTATCTAGTACCANCACGCGTGATATTAAGAAAAAGCTTTTGCA
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