EY660673

Overview
NameEY660673
Unique NameEY660673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_PIG (40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_MOUSE (40S ribosomal protein SA OS=Mus musculus GN=Rpsa PE=1 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_HUMAN (40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_CERAE (40S ribosomal protein SA OS=Cercopithecus aethiops GN=RPSA PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_BOVIN (40S ribosomal protein SA OS=Bos taurus GN=RPSA PE=2 SV=4)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR VL+MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_SALSA (40S ribosomal protein SA OS=Salmo salar GN=rpsa PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.837e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  NIPTIA C+TDSP+RYVDI IP NNKG HS+G ++W+L+R VL+MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNIPTIAMCNTDSPLRYVDIAIPCNNKGHHSVGLMWWMLSREVLRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_DIACI (40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.092e-26
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            P TDHQPI EAA  NIP IAFC+T+SP+R+VDI IP NNK  HSIG ++WLLAR VL+ RGTI    KWDV+VDLFFYR
Sbjct:  127 PHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_PINFU (40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.344e-26
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  NIP IA C+TDSP+RYVD+ IP NNK  HS+G ++WLLAR VL++RGTI   H W+VMVDL+FYR
Sbjct:  127 PRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLRGTISRDHPWEVMVDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_CRIGR (40S ribosomal protein SA OS=Cricetulus griseus GN=Rpsa PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.980e-26
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  N+PTIA C+TDSP+RYVDI IP NNKG HS+G ++W+LAR V +MRGTI   H W+VM DL+FYR
Sbjct:  127 PRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_MAGGR (40S ribosomal protein S0 OS=Magnaporthe grisea GN=RPS0 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.191e-25
Identity = 72/180 (40.00%), Postives = 87/180 (48.33%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQWPSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWDAVPATP---CTVXXGTTQWXQFTGP 540
            PRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMVDL+FYR                D    E    +   E  P+ I  G   GG  +                AT P    GWD   A P    +   G   W +   P
Sbjct:  129 PRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGCIWWMLAREVLRLRGTIYNRETPWDVMVDLYFYRDPEAEAE---------DKVEEEKLAGVE--EVGPAAIESGFATGGGDWE---------------ATAPAAASGWDDAAAQPQNWDSAAQGAASWDEAAAP 282          
The following BLAST results are available for this feature:
BLAST of EY660673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RSSA_PIG1.406e-2665.8240S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=... [more]
RSSA_MOUSE1.406e-2665.8240S ribosomal protein SA OS=Mus musculus GN=Rpsa P... [more]
RSSA_HUMAN1.406e-2665.8240S ribosomal protein SA OS=Homo sapiens GN=RPSA P... [more]
RSSA_CERAE1.406e-2665.8240S ribosomal protein SA OS=Cercopithecus aethiops... [more]
RSSA_BOVIN1.406e-2665.8240S ribosomal protein SA OS=Bos taurus GN=RPSA PE=... [more]
RSSA_SALSA1.837e-2665.8240S ribosomal protein SA OS=Salmo salar GN=rpsa PE... [more]
RSSA_DIACI4.092e-2669.6240S ribosomal protein SA OS=Diaphorina citri PE=2 ... [more]
RSSA_PINFU5.344e-2664.5640S ribosomal protein SA OS=Pinctada fucata PE=2 S... [more]
RSSA_CRIGR6.980e-2664.5640S ribosomal protein SA OS=Cricetulus griseus GN=... [more]
RSSA_MAGGR1.191e-2540.0040S ribosomal protein S0 OS=Magnaporthe grisea GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-024-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660673 ID=EY660673; Name=EY660673; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGCCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCT
TGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTT
ATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGG
TGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTAT
TCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGG
AGCCAGAAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGAT
TATGCTACAGCAGAGTACAGCATGAATCTTACCAGTGGTGAGCAATGGCC
TTCCCAAATTGCTGATGGTGGGTGGGCGGGTGGTGAANNATTCAGAAGCC
CATTCCTGTTGTCCCTATTTCCCAAACACACCGCNNNNNCAGCTACAGTT
CCTTTGGGTGGGGATGGATGGGATGCAGTGCCGGCAACACCATGCACAGT
NNNNNACGGCACCACCCAATGGCANCAGTTTACAGGTCCCTGGAGGTGTT
TGGGGGGCCCCACAAAAAAAAGGGGGGGGGGAAAAAATTTTTTTTTTTTG
AAAGAAAATGGTTTTTTTTAAAAAAAAAAAATTAAAAAAAAAACTTTTTT
TTTTCCCTAACCAAAACAAAAAAANNTGTTTTGNGGAGAAAAAAATCTTC
TTTTCTTCTCTCCTCNNGGCTGAANAANAAATGAAAAGGAAGAGGGGCCG
GGAGAGAGNNGCCCCTCCCTCTTTCTCCCGNNCCTCCTTCCCTTTTCTTT
TTTTTTTTTANT
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