EY660673

Overview
NameEY660673
Unique NameEY660673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_LEIIN (40S ribosomal protein SA OS=Leishmania infantum GN=LinJ36.5570 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.114e-23
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PRTDHQ I+EA+L NIP IA CDTD+P+ YVDI IP NN+G  SIG ++WLLAR VL++RGTI     W+  VDLFFYR
Sbjct:  130 PRTDHQAIREASLVNIPVIALCDTDAPLEYVDIAIPCNNRGIKSIGMMYWLLAREVLRLRGTIVRSVPWEEKVDLFFYR 208          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_UNCRE (40S ribosomal protein S0 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 249
            PRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:  129 PRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLATRETEWDVVVDLYFYR 208          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_ORNPR (40S ribosomal protein SA OS=Ornithodoros parkeri PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 249
            PR DHQP+ EA+  NIP IAFC+TD+ +RYVD+ IP NNK +HSIG ++W+L R VL+MRG+I     WD MVDLFFYR
Sbjct:  127 PREDHQPVTEASYVNIPVIAFCNTDACLRYVDVAIPCNNKAQHSIGLMWWMLTREVLRMRGSIIREIPWDTMVDLFFYR 205          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_BOTFB (40S ribosomal protein S0 OS=Botryotinia fuckeliana (strain B05.10) GN=rps0 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 72/182 (39.56%), Postives = 90/182 (49.45%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQWPSQIADGGWAG-GEXFRSPFLLSLFPKHTAXXATVPLGGDGWDAV-----PATPCT-----VXXGTTQW 522
            PRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR                +   A         ++  +   D G+AG G+   S      F   TA   T   GG  WDA       A P          GT QW
Sbjct:  129 PRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYRDPEAE-----------ENKEAIEEAKAPGADEVGAAAVDQGFAGAGDWEVSGATAGAF---TAASNTAAAGGASWDAAEPSDWAAAPAAAGQEWAASGTEQW 296          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_PHANO (40S ribosomal protein S0 OS=Phaeosphaeria nodorum GN=RPS0 PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.901e-23
Identity = 68/167 (40.72%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQWPSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWDAVPATPCTVXXG 510
            PRTD Q IKEA+  NIP IA CD DSP  YVD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDVM DL+FYR                D A  E +    + E  P+ +ADG  +  E   S      F    A   T       WDA P+T      G
Sbjct:  129 PRTDAQAIKEASYVNIPVIALCDGDSPTEYVDVAIPTNNKGRHAIGLVWWMLAREVLRLRGTLASREAEWDVMTDLYFYRDPEAEENK--------DSAGVEEAKVPGADEVGPAAVADGFTSEWEV--SGASAGAFTSQAAAATT------SWDAEPSTDWAATTG 279          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_MALGO (40S ribosomal protein S0 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.901e-23
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 249
            PR DHQ I+E+A  NIP IA CDTD+P+R+VDI IP NNKG+HSIG L+WLL R  L++RG + R  + W+VMVD+FFYR
Sbjct:  128 PRVDHQAIRESAYVNIPVIALCDTDAPLRHVDIAIPGNNKGRHSIGLLWWLLCREFLRLRGIVPRTPNGWNVMVDMFFYR 207          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_COPC7 (40S ribosomal protein S0 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.901e-23
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 249
            PR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR
Sbjct:  128 PRVDHQAIREASYVNIPVIALCDTDAPLQFVDVAIPTNNKTRHSIGLIWWLLAREVLRLRGTIPRTPDGWNVMVDMFFYR 207          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_SCLS1 (40S ribosomal protein S0 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps0 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.483e-23
Identity = 66/157 (42.04%), Postives = 84/157 (53.50%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXXIDYATAEYSMNLTSGEQWPSQIADGGWAG-GEXFRSPFLLSLFPKHTAXXATVPLGGDGWDA 477
            PRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR                +   A         ++  +   D G+AG G+   S      F   TA   T   GG  WDA
Sbjct:  129 PRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYRDPEAE-----------ENKDAIEEAKAPGADEVGAAAVDQGFAGTGDWEVSGATAGAF---TAASNTAAAGGASWDA 271          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_CHAGB (40S ribosomal protein S0 OS=Chaetomium globosum GN=RPS0 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.483e-23
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 249
            PRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+HSIG ++W+LAR VL++RGTI      WDVM DL+FYR
Sbjct:  129 PRTDSQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTIYNRETPWDVMPDLYFYR 208          
BLAST of EY660673 vs. ExPASy Swiss-Prot
Match: RSSA_ASPTN (40S ribosomal protein S0 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps0 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.483e-23
Identity = 65/159 (40.88%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   13 PRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYRXXXXXXXXXXXXXXXI---DYATAEYSMNLTSGEQWPSQIADGGWAGGEXFRSPFLLSLFPKHTAXXATVPLGGDGWDA 477
            PRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++WLLAR VL++RGT+     +WDV+VDL+FYR               +   D   A    +  +GE W +Q    G  G                TA  A    G   W+A
Sbjct:  129 PRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWLLAREVLRLRGTLASREAEWDVVVDLYFYRDPEAEENKEIAEEAKVPGADEIGAGAVESGFAGENWETQAPGAGVPG----------------TAFAAASAAGATSWEA 271          
The following BLAST results are available for this feature:
BLAST of EY660673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
RSSA_LEIIN1.114e-2364.5640S ribosomal protein SA OS=Leishmania infantum GN... [more]
RSSA_UNCRE1.455e-2363.7540S ribosomal protein S0 OS=Uncinocarpus reesii (s... [more]
RSSA_ORNPR1.455e-2362.0340S ribosomal protein SA OS=Ornithodoros parkeri P... [more]
RSSA_BOTFB1.455e-2339.5640S ribosomal protein S0 OS=Botryotinia fuckeliana... [more]
RSSA_PHANO1.901e-2340.7240S ribosomal protein S0 OS=Phaeosphaeria nodorum ... [more]
RSSA_MALGO1.901e-2362.5040S ribosomal protein S0 OS=Malassezia globosa (st... [more]
RSSA_COPC71.901e-2362.5040S ribosomal protein S0 OS=Coprinopsis cinerea (s... [more]
RSSA_SCLS12.483e-2342.0440S ribosomal protein S0 OS=Sclerotinia sclerotior... [more]
RSSA_CHAGB2.483e-2365.0040S ribosomal protein S0 OS=Chaetomium globosum GN... [more]
RSSA_ASPTN2.483e-2340.8840S ribosomal protein S0 OS=Aspergillus terreus (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-024-G03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660673 ID=EY660673; Name=EY660673; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGCCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCTCT
TGGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTT
ATGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGG
TGTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTAT
TCGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGG
AGCCAGAAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGAT
TATGCTACAGCAGAGTACAGCATGAATCTTACCAGTGGTGAGCAATGGCC
TTCCCAAATTGCTGATGGTGGGTGGGCGGGTGGTGAANNATTCAGAAGCC
CATTCCTGTTGTCCCTATTTCCCAAACACACCGCNNNNNCAGCTACAGTT
CCTTTGGGTGGGGATGGATGGGATGCAGTGCCGGCAACACCATGCACAGT
NNNNNACGGCACCACCCAATGGCANCAGTTTACAGGTCCCTGGAGGTGTT
TGGGGGGCCCCACAAAAAAAAGGGGGGGGGGAAAAAATTTTTTTTTTTTG
AAAGAAAATGGTTTTTTTTAAAAAAAAAAAATTAAAAAAAAAACTTTTTT
TTTTCCCTAACCAAAACAAAAAAANNTGTTTTGNGGAGAAAAAAATCTTC
TTTTCTTCTCTCCTCNNGGCTGAANAANAAATGAAAAGGAAGAGGGGCCG
GGAGAGAGNNGCCCCTCCCTCTTTCTCCCGNNCCTCCTTCCCTTTTCTTT
TTTTTTTTTANT
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