EY660557

Overview
NameEY660557
Unique NameEY660557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660557 vs. ExPASy Swiss-Prot
Match: LEU3_BACFR (3-isopropylmalate dehydrogenase OS=Bacteroides fragilis GN=leuB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 40/126 (31.75%), Postives = 70/126 (55.56%), Query Frame = 2 
Query:    5 PGRPRVREEVV-IDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 379
            P  P V  + + +DN  M +++ P  FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +   +   I+ A+ +++ +   RT ++
Sbjct:  206 PQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKAEGALIRKAVDASL-DANVRTPEI 329
[Close]
BLAST of EY660557 vs. ExPASy Swiss-Prot
Match: LEU3_BACFN (3-isopropylmalate dehydrogenase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=leuB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 40/126 (31.75%), Postives = 70/126 (55.56%), Query Frame = 2 
Query:    5 PGRPRVREEVV-IDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 379
            P  P V  + + +DN  M +++ P  FDV+V  N +GDI++D  + + G +GL PS + GE    + E +HGS P   G N+ANP A +LS   +  + +   +   I+ A+ +++ +   RT ++
Sbjct:  206 PQYPEVTTDYMFVDNAAMKMIQEPKFFDVMVTENTFGDILTDEGSVISGSMGLLPSASTGE-STPVFEPIHGSWPQAKGLNIANPLAQILSVAMLFEYFDCKAEGALIRKAVDASL-DANVRTPEI 329
The following BLAST results are available for this feature:
BLAST of EY660557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_BACFR2.252e-1231.753-isopropylmalate dehydrogenase OS=Bacteroides fra... [more]
LEU3_BACFN2.252e-1231.753-isopropylmalate dehydrogenase OS=Bacteroides fra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-023-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660557 ID=EY660557; Name=EY660557; organism=Citrus sinensis; type=EST; length=750bp
ATTCCCGGGTCGACCACGCGTCCGTGAGGAAGTTGTTATCGACAATTGCT
GCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAATGCCT
AACCTCTATGGTGACATCATTAGTGACCTATGTGCTGGGTTGATTGGTGG
ATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCCCTTG
CTGAAGCTGTTCATGGTTCAGCACCTGATATTGCTGGAAAGAATTTGGCA
AATCCAACTGCTTTGCTGTTGAGTTCGGTAACAATGTTGCGCCATTTGGA
GCTCCATGACAAGGCTGATAGGATCCAAAATGCTATCCTGAGCACAATTG
CAGAGGGGAAGTATCGAACTGCAGATCTTGGTGGCTCTTCAACGACATCA
GATTTCACAAAGGCAATCTGCGATCATCTTTAAATATTTCTTTCTACATA
GAATTTGAATTCGTGTTCAAGATTTACATTCTACCTTTCTTTTTTTGAGC
AATGTCTCAAATTTGTTTTTTTCCCCCCTTTTTAAAGTGTTTTTCTTTGA
GGGGAATAAGACCCATCACCTTGGTGACTATTTAGAAGTTTTTTTCTGAT
GAAACTGTTCAGCCAGAGTGTATATGGCCGTCCTCAGAAAAGGTATTTAT
ACGGCAATATTTATTTCCTCGCTGTCTGTGAAATCCAAAAATTGAACTAA
CCGGATCTGAGAAATTGNTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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