EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_MICAN (Translation initiation factor IF-2 OS=Microcystis aeruginosa (strain NIES-843) GN=infB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.248e-53
Identity = 101/203 (49.75%), Postives = 148/203 (72.91%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++LN+I+K DVQGS+EA+  AL+ LPQ+ V ++ LL + G+I+ +DVDLA AS A+++GFN       +  AD +GV+IR Y +IY L+DD++ AMEGLL+  E +  +G AEVRA+F+ G G VAGC V  GKLV+   +RV R  + V+ GVLDSL+R+KE+ +EV  G ECGVG + ++DW+EGDIIEA+  + ++RT
Sbjct:  805 QLKELNLILKADVQGSVEAILGALKQLPQNEVQIRVLLASPGEITETDVDLAAASGAVVVGFNTTLASGARASADREGVDIRDYNIIYKLLDDIQGAMEGLLDPEEVEEHLGFAEVRAVFTVGRGAVAGCYVQSGKLVRNRFLRVRRGKEIVYQGVLDSLKRMKEDAREVATGFECGVGVSKFNDWKEGDIIEAYEMVMKRRT 1007          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_THEEB (Translation initiation factor IF-2 OS=Thermosynechococcus elongatus (strain BP-1) GN=infB PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.194e-53
Identity = 100/202 (49.50%), Postives = 141/202 (69.80%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  AL  LPQD V L+ LL A G+I+ +DVDLA AS A+I+GFN       +  A+   V+IR Y +IY L+DD++ AMEG+LE    +  +G AEVRAIF    G VAGC V  GKLV+ C +RV+R  + +H G+L SL+R+K++V+EV AG ECGV   D+  W+EGDII AF ++ ++R+
Sbjct:  748 LKELNLILKADVQGSVEAILTALNQLPQDQVQLRVLLAAPGEITETDVDLAAASSAVIIGFNTTLASGARQAAEQHNVDIREYNIIYKLLDDIQGAMEGMLEPELVEEELGQAEVRAIFPLSKGVVAGCYVLNGKLVRNCKVRVLRQQQVIHTGILSSLKRLKDDVREVAAGYECGVRLDDFQQWQEGDIIYAFQTVTKRRS 949          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM5 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9515) GN=infB PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 8.090e-53
Identity = 99/202 (49.01%), Postives = 141/202 (69.80%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP++ V ++ LL A G+I+ +D+DLA AS ++I+GFN       K  AD+  V+IR Y VIY L++D+++AMEGLLE    +  +G AEVRA F+ G G +AGC +  GKL + C +RV+R  K +  G LDSL+R K++VKEVN G ECGVG   +  W EGDIIEAF  + +KRT
Sbjct:  957 LKELNLILKADVQGSVEAILGSLEQLPKNEVQVRVLLSAPGEITETDIDLAAASGSVIIGFNTSLASGAKRAADSNNVDIREYEVIYKLLEDIQSAMEGLLEPDLVEESLGQAEVRATFAVGKGAIAGCYIQSGKLQRNCSLRVLRSDKVIFEGNLDSLKRSKDDVKEVNTGFECGVGCDKFSTWNEGDIIEAFKFVTKKRT 1158          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNP2 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=infB PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.057e-52
Identity = 102/202 (50.50%), Postives = 144/202 (71.29%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+++K DVQGS+EA+  +LQ LPQD V ++ LL A G+IS +DVDLA AS AII+GFN       +  A+ +GV+IR Y VIY  +++++ AMEGLL+  E + P+G AEVRA+F  G G VAGC V  GK+V+   IRV R    V+ G LDSL+RV+E+V+EVN+G ECG+G   +  W+EGDIIEA+  + ++RT
Sbjct:  772 LKELNLVLKADVQGSVEAILGSLQQLPQDEVQIRVLLSAPGEISETDVDLAAASGAIIIGFNTTLAPGARQAAEQEGVDIREYNVIYRFLEEIQGAMEGLLDPEEVEEPLGRAEVRAVFPVGRGSVAGCYVQSGKVVRNRMIRVRRGDVVVYDGSLDSLKRVREDVREVNSGYECGIGVDKFSTWKEGDIIEAYEMVFKRRT 973          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROMS (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain AS9601) GN=infB PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.380e-52
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP++ V ++ LL A G+I+ +D+DLA AS ++I+GFN       K  AD   V+IR Y VIY L++D++ AMEGLLE    +  +G AEVRA FS G G +AGC +  GKL + C +RVIR  K +  G LDSL+RVK++VKEVN G ECGVG   +  W EGD+IEAF  + +KRT
Sbjct:  922 LKELNLILKADVQGSVEAILGSLEQLPKNEVQVRVLLSAPGEITETDIDLAAASGSVIVGFNTSLASGAKRAADANDVDIREYEVIYKLLEDIQLAMEGLLEPDLVEESLGQAEVRATFSVGKGAIAGCYIQTGKLQRNCSLRVIRSEKVIFEGNLDSLKRVKDDVKEVNTGFECGVGCDKFSSWVEGDVIEAFKFVTKKRT 1123          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNY3 (Translation initiation factor IF-2 OS=Synechocystis sp. (strain PCC 6803) GN=infB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.354e-52
Identity = 96/202 (47.52%), Postives = 145/202 (71.78%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+ A+  +L+ LPQ  V ++ LL + G+++ +DVDLA AS AII+GFN       +  AD +GV+IR Y +IY L+DD++ AMEGLL+  E +  +G+AEVRA+F  G G +AGC V  GK+++   +RV R  + +  G +DSL+R+KE+V+EVNAG ECG+G + ++DW+EGDIIEA+    ++RT
Sbjct:  797 LKELNIILKADVQGSLGAILGSLEQLPQGEVQIRVLLASPGEVTETDVDLAAASGAIIIGFNTTLASGARQAADQEGVDIREYDIIYKLLDDIQGAMEGLLDPEEIESSLGTAEVRAVFPVGRGNIAGCYVQSGKIIRNRNLRVRRGDQVLFEGNIDSLKRIKEDVREVNAGYECGIGCSKFNDWKEGDIIEAYEMTMKRRT 998          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNJA (Translation initiation factor IF-2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=infB PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.074e-52
Identity = 102/203 (50.25%), Postives = 143/203 (70.44%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++LN+I+K DVQGS EA++ ALQ LPQ+ V L+ LL A G+I+ +DVDLA AS AIILGFN       +  AD+KGV++R Y +IY+L+DD+R AMEGLLE  E + P+G AEVR +     G VAG  V  GK+ +   +RV R G+ V+ G LDSL+R K++V+EV AG ECG+G   +D W+EGD+IE +  + ++RT
Sbjct:  825 QLKELNLIIKTDVQGSAEAIQTALQDLPQEEVRLRVLLAAPGEITETDVDLAAASDAIILGFNTSFAPGARQAADDKGVDVREYDIIYNLLDDLRAAMEGLLEPEEVEEPLGQAEVRKVIPISRGAVAGSYVLSGKVQRNALVRVRRKGEVVYQGRLDSLKRFKDDVREVAAGFECGIGIEKFDAWQEGDLIEVYQMVTKRRT 1027          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNJB (Translation initiation factor IF-2 OS=Synechococcus sp. GN=infB PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.244e-52
Identity = 102/203 (50.25%), Postives = 143/203 (70.44%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++LN+I+K DVQGS EA++ AL+ LPQ+ V L+ LL A G+I+ +DVDLA AS AIILGFN       +  AD+KGV++R Y +IY+L+DD+R AMEGLLE  E + P+G AEVR +   G G VAG  V  GK+ +   +RV R G+ V+ G LDSL+R K++V+EV AG ECG+G   +  W+EGDIIE +  + ++RT
Sbjct:  848 QLKELNLIIKTDVQGSAEAIQTALRDLPQEEVQLRVLLAAPGEITETDVDLAAASDAIILGFNTTLAPGARQAADDKGVDVREYDIIYNLLDDLRAAMEGLLEPEEVEEPLGQAEVRLVIPIGRGAVAGSYVLSGKVQRNALVRVRRRGEVVYEGRLDSLKRFKDDVREVAAGFECGIGIDKFQSWQEGDIIEVYQMVTKRRT 1050          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM9 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9312) GN=infB PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.244e-52
Identity = 100/202 (49.50%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP++ V ++ LL A G+I+ +D+DLA AS ++I+GFN       K  AD   V+IR Y VIY L++D++ AMEGLLE    +  +G AEVRA F+ G G +AGC +  GKL + C +RVIR  K +  G LDSL+R K++VKEVN G ECGVG   +  W EGDIIEAF  + +KRT
Sbjct:  924 LKELNLILKADVQGSVEAILGSLEQLPKNEVQVRVLLSAPGEITETDIDLAAASGSVIIGFNTSLASGAKRAADANDVDIREYEVIYKLLEDIQLAMEGLLEPDLVEESLGKAEVRATFAVGKGAIAGCYIQTGKLQRNCSLRVIRSDKVIFEGNLDSLKRSKDDVKEVNTGFECGVGCDKFSSWTEGDIIEAFKFVTKKRT 1125          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM2 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9215) GN=infB PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.849e-52
Identity = 100/202 (49.50%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP++ V ++ LL A G+I+ +D+DLA AS ++I+GFN       K  AD   V++R Y VIY L++D++ AMEGLLE    +  +G AEVRA FS G G +AGC +  GKL + C +RVIR  K +  G LDSL+R K++VKEVN G ECGVG   +  W EGDIIEAF  + +KRT
Sbjct:  914 LKELNLILKADVQGSVEAILGSLEQLPKNEVQVRVLLSAPGEITETDIDLAAASGSVIIGFNTSLASGAKKAADANDVDVREYEVIYKLLEDIQLAMEGLLEPDLVEESLGKAEVRATFSVGKGAIAGCYIQTGKLQRNCSLRVIRSEKVIFEGNLDSLKRSKDDVKEVNTGFECGVGCDKFSSWIEGDIIEAFKFVTKKRT 1115          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_MICAN1.248e-5349.75Translation initiation factor IF-2 OS=Microcystis ... [more]
IF2_THEEB6.194e-5349.50Translation initiation factor IF-2 OS=Thermosynech... [more]
IF2_PROM58.090e-5349.01Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_SYNP21.057e-5250.50Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_PROMS1.380e-5250.00Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_SYNY32.354e-5247.52Translation initiation factor IF-2 OS=Synechocysti... [more]
IF2_SYNJA3.074e-5250.25Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNJB5.244e-5250.25Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_PROM95.244e-5249.50Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_PROM26.849e-5249.50Translation initiation factor IF-2 OS=Prochlorococ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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