EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BART1 (Translation initiation factor IF-2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=infB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.359e-44
Identity = 88/203 (43.35%), Postives = 133/203 (65.52%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V++ ++I+K DVQGSIEA+  AL+ L  D V  + +    G I+ SD+ LA AS + ++GFNV+A    + +A  +G+EIR Y +IYDL+DD++ AM GLL   + +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +Y+D   GDIIE F      RT
Sbjct:  639 VKEFSLIIKGDVQGSIEAIASALEKLGNDEVRARVVHSGAGGITESDISLAEASNSAVIGFNVRANKQARDFAKTQGIEIRYYNIIYDLVDDIKAAMSGLLSPEQRETFLGNAEILEVFNITKIGKVAGCRVTEGKIERGAGVRLIRDNIVIHEGKLKTLKRFKDEVNEVQSGQECGIAFENYEDMRAGDIIETFRIEHINRT 841          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_TOLAT (Translation initiation factor IF-2 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=infB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.081e-44
Identity = 91/203 (44.83%), Postives = 133/203 (65.52%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LNV++K DVQGS+EA+  +L  L  D V ++ +    G I+ +D  LA AS AI+LGFNV+A  S +   +++ +++R Y VIYDLID++R AM G+L    +Q  IG AEVR +F S   G VAGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G ECG+   +Y+D   GD IE + +++ +RT
Sbjct:  707 VSELNVVLKADVQGSVEAIADSLNKLSTDEVKVRIIGSGVGGITETDASLAAASNAIVLGFNVRADASARKIIESESIDLRYYSVIYDLIDEVRQAMSGMLAPEYKQQIIGLAEVRDVFRSPKFGAVAGCMVTEGTVKRNSPIRVLRDNVVIYEGELESLRRFKDDVPEVKNGYECGIAVKNYNDVRPGDQIEVYETVEIQRT 909          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICPR (Translation initiation factor IF-2 OS=Rickettsia prowazekii GN=infB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.081e-44
Identity = 89/203 (43.84%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DVQGSIEA+  +L  LP D + L+ L    G I+ SDV LA  S AI++GFNV+A  +  T A+   V+IR Y +IY+LIDD++  M G+LE +  +  IGS E+R IF+ +  G++AG  V++G + KG G+R++RD   +H G L +L+R K+ VKEV  G ECG+   +Y+D  EGD +E F  +Q +R
Sbjct:  627 KIKELPLIIKCDVQGSIEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHVSSAIVVGFNVRAWANALTAAEKTKVDIRYYSIIYNLIDDVKAIMSGMLEPIVREQYIGSVEIRQIFNITKIGKIAGSYVTKGIIKKGAGVRLLRDNVVIHAGKLKTLKRFKDEVKEVREGYECGIAFENYEDIREGDTVEVFELVQEQR 829          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICCN (Translation initiation factor IF-2 OS=Rickettsia conorii GN=infB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.081e-44
Identity = 91/203 (44.83%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DVQGS+EA+  +L  LP D + L+ L    G I+ SDV LA AS AII+GFNV+A  +  T A+ + V+IR Y +IY LIDD++  M G+L+ +  +  IGSAE+R IF+ +  G++AG  V++G + KG G+R++RD   +H G L +L+R K+ VKEV  G ECG+   +Y D  EGD +E F  IQ +R
Sbjct:  627 KIKELPLIIKGDVQGSVEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHASSAIIVGFNVRAGANALTAAEKEKVDIRYYSIIYHLIDDIKAIMSGMLDPIVREQYIGSAEMRQIFNITKVGKIAGSYVTKGIIKKGAGVRLLRDNVVIHEGKLKTLKRFKDEVKEVREGYECGIAFENYQDIREGDTVEVFELIQEQR 829          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOCE (Translation initiation factor IF-2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=infB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.081e-44
Identity = 95/203 (46.80%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +V+ LN+I+K DVQGS+EAV+Q+L+ L  D V +K +  A G I+ SDV LA  S AII+GFNV+   +V   A N  V++RLY VIY  I+D++ AM G+LE   ++V +G  E+R IF  SG G + G  V++GK+ +   +RV+R+G  +H G L SL+R K++VKEV  G ECGV    ++D +EGD+IEAF   + KR
Sbjct:  959 KVKDLNIIIKADVQGSVEAVKQSLEKLSNDEVRVKTIHGAVGAITESDVTLAQVSNAIIIGFNVRPGANVTEAAKNAEVDMRLYSVIYKAIEDVQAAMNGMLEPTYKEVILGHIEIRQIFKVSGVGTIGGAYVTDGKVQRNSEVRVVREGIVIHEGKLASLKRFKDDVKEVAQGFECGVSIERFNDIKEGDVIEAFVMEEVKR 1161          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SHESH (Translation initiation factor IF-2 OS=Shewanella sediminis (strain HAW-EB3) GN=infB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.024e-44
Identity = 89/203 (43.84%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V++LN+I+K DVQGS+EA+  +L  L  D V +  + +  G ++ +D  LA AS AI++GFN++A    +   D + V++R Y VIY LID++RNAM GLL    +QV +G AEVR +F S   G +AGCMV+EG + +   IRV+R+   ++ G L+SLRR K++V +V  G+ECG+G  +Y+D   GD IE F +I+  R+
Sbjct:  691 VQELNIILKADVQGSLEAIADSLNKLSTDEVKVNIIARGVGGLTETDASLAAASNAIMIGFNIRADAQARKVIDAESVDLRYYSVIYHLIDEVRNAMSGLLAPEFKQVILGLAEVRDVFKSPKIGAIAGCMVTEGTIKRSAPIRVLRENVVIYEGELESLRRFKDDVADVRNGMECGIGVKNYNDVRVGDQIEVFETIEIARS 893          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATW (Translation initiation factor IF-2 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=infB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 4.024e-44
Identity = 92/192 (47.92%), Postives = 129/192 (67.19%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVF 837          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GRAFK (Translation initiation factor IF-2 OS=Gramella forsetii (strain KT0803) GN=infB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.256e-44
Identity = 86/202 (42.57%), Postives = 136/202 (67.33%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++LN+I+K DV GS+EA+  + Q L  + + +  + +  G I+ SDV LA AS A+I+GFNV+  G+ +  AD + ++IR Y +IYD I+D+++AMEG+L    ++   G+AE+R  F  S  G +AGCMV+ G + +  G+R+IRDG  V+ G L SL+R K++V+EV  G +CG+   +Y+D  EGD+IEAF  ++ K+T
Sbjct:  733 KELNIILKGDVDGSVEALTDSFQKLSTEEIQVNIIHKGVGAITESDVLLASASDAVIIGFNVRPAGNARQVADKEEIDIRTYSIIYDAINDLKDAMEGMLSPELKEEITGTAEIRETFKISKIGTIAGCMVTSGTIYRSAGVRLIRDGVVVYTGELSSLKRFKDDVREVKKGYDCGMQVKNYNDIREGDVIEAFREVEVKKT 934          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOPS (Translation initiation factor IF-2 OS=Clostridium perfringens (strain SM101 / Type A) GN=infB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.256e-44
Identity = 92/203 (45.32%), Postives = 141/203 (69.46%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRK 606
            V++L+VI+K DVQGS+EA++ +L+ L  D+V ++ +  A G IS +D+ LA AS AI++GFNV+   +    ++  GVE++ YRVIYD I+D+++AM G+L+   ++V +G+AE+RA +  S  G +AG  V  GKLV+   +RVIR+G  +    L SL+R K++VKEVNAG ECG     ++D +EGDIIEA+   ++QRK
Sbjct:  475 VKELSVIVKADVQGSVEAIKASLEKLSTDDVKVRVIHGAVGAISETDITLAAASNAIVIGFNVRPDNNAVAASERDGVEVKTYRVIYDAIEDIKSAMIGMLDPEYKEVVLGTAEIRATYKISNVGTIAGGYVLTGKLVRNADVRVIREGIVIFESKLASLKRFKDDVKEVNAGYECGFSVEKFNDIKEGDIIEAYTMEAVQRK 677          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOPE (Translation initiation factor IF-2 OS=Clostridium perfringens GN=infB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.256e-44
Identity = 92/203 (45.32%), Postives = 141/203 (69.46%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRK 606
            V++L+VI+K DVQGS+EA++ +L+ L  D+V ++ +  A G IS +D+ LA AS AI++GFNV+   +    ++  GVE++ YRVIYD I+D+++AM G+L+   ++V +G+AE+RA +  S  G +AG  V  GKLV+   +RVIR+G  +    L SL+R K++VKEVNAG ECG     ++D +EGDIIEA+   ++QRK
Sbjct:  475 VKELSVIVKADVQGSVEAIKASLEKLSTDDVKVRVIHGAVGAISETDITLAAASNAIVIGFNVRPDNNAVAASERDGVEVKTYRVIYDAIEDIKSAMIGMLDPEYKEVVLGTAEIRATYKISNVGTIAGGYVLTGKLVRNADVRVIREGIVIFESKLASLKRFKDDVKEVNAGYECGFSVEKFNDIKEGDIIEAYTMEAVQRK 677          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_BART12.359e-4443.35Translation initiation factor IF-2 OS=Bartonella t... [more]
IF2_TOLAT3.081e-4444.83Translation initiation factor IF-2 OS=Tolumonas au... [more]
IF2_RICPR3.081e-4443.84Translation initiation factor IF-2 OS=Rickettsia p... [more]
IF2_RICCN3.081e-4444.83Translation initiation factor IF-2 OS=Rickettsia c... [more]
IF2_CLOCE3.081e-4446.80Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_SHESH4.024e-4443.84Translation initiation factor IF-2 OS=Shewanella s... [more]
IF2_FRATW4.024e-4447.92Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_GRAFK5.256e-4442.57Translation initiation factor IF-2 OS=Gramella for... [more]
IF2_CLOPS5.256e-4445.32Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_CLOPE5.256e-4445.32Translation initiation factor IF-2 OS=Clostridium ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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