EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEGPC (Translation initiation factor IF-2 OS=Legionella pneumophila (strain Corby) GN=infB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.965e-44
Identity = 89/199 (44.72%), Postives = 131/199 (65.83%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            LN+++K DVQGS+EA+  AL  L  D V ++ +    G I+ SDV LA+AS AI++GFNV+A G+ K  A+ + V I  Y VIYD++D ++ A+ G+L    ++  IG AEVR +F S   G +AGCMV EG + +   IRV+R    ++ G L+SLRR K++V EV  G ECG+G  +Y+D + GD+IE F +++ KR
Sbjct:  668 LNIVLKADVQGSLEAISDALTKLSTDEVKVEVISSGVGGITESDVHLAIASNAILIGFNVRADGTAKRLAEQESVSIHYYSVIYDIVDQIKGALTGMLAPQFKEEIIGIAEVRDVFKSPKIGAIAGCMVIEGVVKRNNPIRVLRSNVVIYEGTLESLRRFKDDVLEVRQGFECGIGVKNYNDVKPGDLIEVFETVEIKR 866
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LACRJ (Translation initiation factor IF-2 OS=Lactobacillus reuteri (strain JCM 1112) GN=infB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.965e-44
Identity = 90/196 (45.92%), Postives = 137/196 (69.90%), Query Frame = 1 
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            +++ L +I+K DVQGS+EA+ Q+LQ +  D V +  + QA G I+ SDV LA AS A+I+GFNV+     KT AD+  ++IRL+RVIYD I+++ +AM+G+LE V ++  IG  EVR I+ +S  G +AG MV+ GK+ +   +R++RDG  ++ G L SL+R K++VKEV  G ECG+   +Y+D +E D+IEA+
Sbjct:  549 QMKTLPIIIKADVQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIEEVEDAMKGMLEPVYKEETIGQVEVRQIYKASKVGTIAGGMVTSGKITRDAKVRLVRDGVVIYEGELGSLKRFKDDVKEVKQGYECGLTIENYNDIKEMDVIEAY 744
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LACRD (Translation initiation factor IF-2 OS=Lactobacillus reuteri (strain DSM 20016) GN=infB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.965e-44
Identity = 90/196 (45.92%), Postives = 137/196 (69.90%), Query Frame = 1 
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            +++ L +I+K DVQGS+EA+ Q+LQ +  D V +  + QA G I+ SDV LA AS A+I+GFNV+     KT AD+  ++IRL+RVIYD I+++ +AM+G+LE V ++  IG  EVR I+ +S  G +AG MV+ GK+ +   +R++RDG  ++ G L SL+R K++VKEV  G ECG+   +Y+D +E D+IEA+
Sbjct:  549 QMKTLPIIIKADVQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIEEVEDAMKGMLEPVYKEETIGQVEVRQIYKASKVGTIAGGMVTSGKITRDAKVRLVRDGVVIYEGELGSLKRFKDDVKEVKQGYECGLTIENYNDIKEMDVIEAY 744
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GEOSM (Translation initiation factor IF-2 OS=Geobacter sp. (strain M21) GN=infB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.965e-44
Identity = 92/195 (47.18%), Postives = 132/195 (67.69%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ LN I+K DVQGS+EAV ++L+ L  D + L  L  + G I+ +DV+LA AS AIILGFNV+        A+ +GV++RLY +IYD +DD++ AMEGLLE   ++  +G AE+R +FS   +G VAG  V++GK+V+   +R++RD   V+ G L SLRR K++VKEV  G ECG+   +Y+D + GDI E F
Sbjct:  777 VKDLNAIVKGDVQGSVEAVAESLRKLSTDAIRLNVLHASVGAITETDVNLASASNAIILGFNVRPEVKAAALAEKEGVDVRLYNIIYDAVDDIKKAMEGLLEPTFKEKYLGRAEIREVFSVPKAGMVAGSYVTDGKIVRNAQVRLLRDNMVVYEGKLGSLRRFKDDVKEVATGYECGMSLENYNDLKVGDIFECF 971
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOBB (Translation initiation factor IF-2 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=infB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.965e-44
Identity = 91/204 (44.61%), Postives = 137/204 (67.16%), Query Frame = 1 
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRK 606
            +V++L +I+K DVQGS++A+ Q+L+ L  D+V ++ +    G I+ +D+ LA AS AI++GFNV+   +    AD + VEI+ YR+IYD I+D+++AM G+LE   ++V +GSAEVR  +  S  G +AGC V  GKL +    RVIRDG  +    L SL+R K++VKEVN G ECG+    ++D +EGDI+E F   +I+RK
Sbjct:  482 KVKELGIIVKADVQGSVQAINQSLEKLSTDDVKVRVIHSGVGAITETDITLATASNAIVIGFNVRPDNNAVAQADKENVEIKTYRIIYDAIEDVKSAMIGMLEPEYKEVILGSAEVRETYKISNVGTIAGCYVLNGKLQRNAETRVIRDGIVIFESNLSSLKRFKDDVKEVNTGYECGLTVEKFNDVKEGDILECFMMEAIKRK 685
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYMTH (Translation initiation factor IF-2 OS=Symbiobacterium thermophilum GN=infB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.171e-43
Identity = 91/195 (46.67%), Postives = 130/195 (66.67%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            ++ LNVI+K DVQGS+EA+R  L+ L  + V +K +    G IS SDV LAVASKAII+GFNV+        AD  G+++R Y VIYD++DD+  AM+G+L+   E+V +G AEVR  F     G  AGCMV +GK+ +    R+IRDG  V  G +++LRR K+ V+EV+ G ECG+   ++ D++ GDI+EA+
Sbjct:  842 IKDLNVIVKADVQGSVEAIRGQLEKLRNEEVKVKVIHAGVGAISESDVMLAVASKAIIIGFNVRPDDRASRAADEHGIDVRTYSVIYDIVDDIEAAMKGMLKPKIEEVILGKAEVRETFKVPKVGMAAGCMVIQGKVTRNARYRLIRDGVVVWDGEINALRRFKDEVREVSEGYECGITLQNFHDFKRGDILEAY 1036
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SHEPA (Translation initiation factor IF-2 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=infB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.171e-43
Identity = 87/203 (42.86%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V++LN+++K DVQGS+EA+  +L  L  D V +  + +  G ++ +D  LA AS AI++GFNV+A    +   D++ V++R Y +IY LID++R+AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V +V  G+ECG+G  +Y+D   GD IE F +++  RT
Sbjct:  693 VQELNLVLKADVQGSLEAIADSLNSLSTDEVKVNIIARGVGGLTETDATLAAASNAIMVGFNVRADAQARKVVDSESVDLRYYSIIYQLIDEVRDAMSGMLAPEFKQEIIGLAEVRDVFKSPKIGAIAGCMVTEGTIKRSAPIRVLRDNIVIYEGELESLRRFKDDVSDVRNGMECGIGVKNYNDVRVGDQIEVFETVEIART 895
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEGPL (Translation initiation factor IF-2 OS=Legionella pneumophila (strain Lens) GN=infB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.171e-43
Identity = 88/199 (44.22%), Postives = 131/199 (65.83%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            LN+++K DVQGS+EA+  AL  L  D V ++ +    G I+ SDV LA+AS AI++GFNV+A G+ K  A+ + V I  Y VIYD++D ++ A+ G+L    ++  +G AEVR +F S   G +AGCMV EG + +   IRV+R    ++ G L+SLRR K++V EV  G ECG+G  +Y+D + GD+IE F +++ KR
Sbjct:  668 LNIVLKADVQGSLEAISDALTKLSTDEVKVEVISSGVGGITESDVHLAIASNAILIGFNVRADGTAKRLAEQESVSIHYYSVIYDIVDQIKGALTGMLAPQFKEEIVGIAEVRDVFKSPKIGAIAGCMVIEGVVKRNNPIRVLRSNVVIYEGTLESLRRFKDDVLEVRQGFECGIGVKNYNDVKPGDLIEVFETVEIKR 866
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEGPA (Translation initiation factor IF-2 OS=Legionella pneumophila (strain Paris) GN=infB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.171e-43
Identity = 88/199 (44.22%), Postives = 131/199 (65.83%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            LN+++K DVQGS+EA+  AL  L  D V ++ +    G I+ SDV LA+AS AI++GFNV+A G+ K  A+ + V I  Y VIYD++D ++ A+ G+L    ++  +G AEVR +F S   G +AGCMV EG + +   IRV+R    ++ G L+SLRR K++V EV  G ECG+G  +Y+D + GD+IE F +++ KR
Sbjct:  668 LNIVLKADVQGSLEAISDALTKLSTDEVKVEVISSGVGGITESDVHLAIASNAILIGFNVRADGTAKRLAEQESVSIHYYSVIYDIVDQIKGALTGMLAPQFKEEIVGIAEVRDVFKSPKIGAIAGCMVIEGVVKRNNPIRVLRSNVVIYEGTLESLRRFKDDVLEVRQGFECGIGVKNYNDVKPGDLIEVFETVEIKR 866
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GEOBB (Translation initiation factor IF-2 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=infB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.171e-43
Identity = 92/195 (47.18%), Postives = 132/195 (67.69%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ LN I+K DVQGS+EAV ++L+ L  D + L  L  + G I+ +DV+LA AS AIILGFNV+        A+ +GV++RLY +IYD +DD++ AMEGLLE   ++  +G AE+R +FS   +G VAG  V++GK+V+   +R++RD   V+ G L SLRR K++VKEV  G ECG+   +Y+D + GDI E F
Sbjct:  783 VKDLNAIVKGDVQGSVEAVAESLRKLSTDAIRLNVLHASVGAITETDVNLASASNAIILGFNVRPEVKAAALAEKEGVDVRLYNIIYDAVDDIKKAMEGLLEPTFKEKYLGRAEIREVFSVPKAGMVAGSYVTDGKIVRNAQVRLLRDNMVVYEGKLGSLRRFKDDVKEVATGYECGMSLENYNDLKIGDIFECF 977
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_LEGPC8.965e-4444.72Translation initiation factor IF-2 OS=Legionella p... [more]
IF2_LACRJ8.965e-4445.92Translation initiation factor IF-2 OS=Lactobacillu... [more]
IF2_LACRD8.965e-4445.92Translation initiation factor IF-2 OS=Lactobacillu... [more]
IF2_GEOSM8.965e-4447.18Translation initiation factor IF-2 OS=Geobacter sp... [more]
IF2_CLOBB8.965e-4444.61Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_SYMTH1.171e-4346.67Translation initiation factor IF-2 OS=Symbiobacter... [more]
IF2_SHEPA1.171e-4342.86Translation initiation factor IF-2 OS=Shewanella p... [more]
IF2_LEGPL1.171e-4344.22Translation initiation factor IF-2 OS=Legionella p... [more]
IF2_LEGPA1.171e-4344.22Translation initiation factor IF-2 OS=Legionella p... [more]
IF2_GEOBB1.171e-4347.18Translation initiation factor IF-2 OS=Geobacter be... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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