EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOBA (Translation initiation factor IF-2 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=infB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.171e-43
Identity = 91/204 (44.61%), Postives = 137/204 (67.16%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRK 606
            +V++L +I+K DVQGS++A+ Q+L+ L  D+V ++ +    G I+ +D+ LA AS AI++GFNV+   +    AD + VEI+ YR+IYD I+D+++AM G+LE   ++V +GSAEVR  +  S  G +AGC V  GKL +    RVIRDG  +    L SL+R K++VKEVN G ECG+    ++D +EGDI+E F   +I+RK
Sbjct:  482 KVKELGIIVKADVQGSVQAINQSLEKLSTDDVKVRVIHGGVGAITETDITLATASNAIVIGFNVRPDNNAVAQADKENVEIKTYRIIYDAIEDVKSAMIGMLEPEYKEVILGSAEVRETYKISNVGTIAGCYVLNGKLQRNAETRVIRDGIVIFESSLSSLKRFKDDVKEVNTGYECGLTVEKFNDVKEGDILECFMMEAIKRK 685          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_HAMD5 (Translation initiation factor IF-2 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=infB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.529e-43
Identity = 93/203 (45.81%), Postives = 132/203 (65.02%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + +LN+++K DVQGS EA+R+ALQ L  D V +K +    G I+ +D  LA AS AIILGFNV+A  + +   + + + +R Y VIYDL+D+++ AM G+L    EQ  IG AEVR +F S   G +AGCMV EG + +   IRV+R+   ++ G L+SLRR K++V EV  G+ECG+G  +Y D +  D IE F  I+ KRT
Sbjct:  679 ISELNIVLKSDVQGSCEAIREALQKLSTDEVKIKIIGSGVGGITETDATLAAASNAIILGFNVRADAATRRLVEAENLNLRYYSVIYDLLDEVKQAMSGMLSPKYEQKIIGLAEVRDVFKSPKFGAIAGCMVVEGLIKRSSPIRVLRNNVVIYEGELESLRRFKDDVNEVRNGIECGIGVKNY-DVQVNDTIEVFEIIEIKRT 880          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ENTCL (Translation initiation factor IF-2 OS=Enterobacter cloacae GN=infB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.529e-43
Identity = 90/203 (44.33%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V ++NV++K DVQGS+EA+  +L  L  D V +K +    G I+ +D  LA AS AI++GFNV+A  S +   +++ +++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ +RT
Sbjct:  693 VHEVNVVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGNIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRT 895          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_DESDA (Translation initiation factor IF-2 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=infB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.529e-43
Identity = 89/200 (44.50%), Postives = 136/200 (68.00%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS+EA+ +AL     D V +  +   TG I+ SD+ LA AS+AII+GFNV+    +K  A+++ V+IR Y +IY L+DD+++AM GLL  V+ +V +G AEVR  FS    G +AG  V++GK+ +  G+R++RDG  V+ G + SL+R K++ +EV  G ECGVG  +++D + GDIIEAF +++   T
Sbjct:  797 LNLVLKSDVQGSLEAITEALLKQSTDKVRINVVHGGTGAITESDILLASASQAIIIGFNVRPTAKIKDVAEHENVDIRFYEIIYKLVDDIKSAMAGLLAPVQREVYLGQAEVRDTFSVPKIGLIAGSYVADGKIARNAGVRLLRDGVVVYTGKISSLKRFKDDAREVVKGNECGVGLENFNDVKIGDIIEAFETVEEAAT 996          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRUC2 (Translation initiation factor IF-2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=infB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.529e-43
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  A+ +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +YDD   GD+IEAF      RT
Sbjct:  757 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARNSAEQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVAEVPSGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 958          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ALKOO (Translation initiation factor IF-2 OS=Alkaliphilus oremlandii (strain OhILAs) GN=infB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.529e-43
Identity = 89/203 (43.84%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++ LN+I+K D QGS+EAV+Q+L  L  D V +  +    G I+ SDV LA AS AII+GFNV+   +  + A  + V+IR YR+IY  I+D+  AM+G+L+    +  +G AEVRA F   G+G + GC V EGK+++   IR++RD   +H G +DSL+R K++ KEV  G ECG+G + ++D +EGDIIEA++  + +R
Sbjct:  517 QLKDLNLIIKADTQGSVEAVKQSLVKLSNDEVVINPIHGGVGGITESDVMLATASNAIIIGFNVRPTSNAASAAKKENVDIRTYRIIYKAIEDIEAAMKGMLDPEFVEEELGKAEVRATFKVPGAGTIGGCYVIEGKILRNAKIRLVRDNIVIHEGSIDSLKRFKDDAKEVATGYECGIGISQFNDLKEGDIIEAYHMKEIER 719          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSYIN (Translation initiation factor IF-2 OS=Psychromonas ingrahamii (strain 37) GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 89/203 (43.84%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS+EA+ ++L  L  D V +  + +  G I+ +D  LA AS AI++GFNV+A  S +   +N+GV++  Y +IY LID++R AM GLL     Q   G A+VR +F S   G +AGCMV+EG + +   IRV+R+   ++ GVL+SLRR ++++ EV  G+ECG+G  +Y+D   GD IE F +I+ KRT
Sbjct:  677 VSELNIVLKADVQGSLEAICESLNKLSTDEVKVNIIGRGVGGITETDASLASASGAIVIGFNVRADASARKLIENEGVDLHYYSIIYGLIDEVRAAMSGLLAPEYRQEITGIADVREVFKSPKIGAIAGCMVTEGTIKRNNPIRVLRENIVIYEGVLESLRRFRDDLSEVRNGMECGIGVKNYNDVRVGDQIEVFETIEIKRT 879          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEGPH (Translation initiation factor IF-2 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 88/199 (44.22%), Postives = 130/199 (65.33%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            LN+++K DVQGS+EA+  AL  L  D V +  +    G I+ SDV LA+AS AI++GFNV+A G+ K  A+ + V I  Y VIYD++D ++ A+ G+L    ++  +G AEVR +F S   G +AGCMV EG + +   IRV+R    ++ G L+SLRR K++V EV  G ECG+G  +Y+D + GD+IE F +++ KR
Sbjct:  668 LNIVLKADVQGSLEAISDALTKLSTDEVKVDVISSGVGGITESDVHLAIASNAILIGFNVRADGTAKRLAEQESVSIHYYSVIYDIVDQIKGALTGMLAPQFKEEIVGIAEVRDVFKSPKIGAIAGCMVIEGVVKRNNPIRVLRSNVVIYEGTLESLRRFKDDVLEVRQGFECGIGVKNYNDVKPGDLIEVFETVEIKR 866          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GEOUR (Translation initiation factor IF-2 OS=Geobacter uraniireducens (strain Rf4) GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 92/195 (47.18%), Postives = 132/195 (67.69%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ LNVI+K DVQGS+EAV ++L+ L  D + L  +  + G I+ +DV+LA AS AIILGFNV+     +  A+ +GV++RLY +IYD +DD++ AMEGLLE    +  +G AE+R  FS    G VAG  V +GK+V+   +R++RD   V+ G + SLRR K++VK+V  G ECG+   +Y+D + GDIIEAF
Sbjct:  679 VKDLNVIVKGDVQGSVEAVAESLRKLSTDAIRLNVIHASVGAITETDVNLATASNAIILGFNVRPEVKAQALAEKEGVDVRLYNIIYDAVDDIKKAMEGLLEPTLREKFLGRAEIRETFSVPKHGTVAGSYVLDGKMVRNAQVRLLRDNVVVYEGKMASLRRFKDDVKDVATGYECGISLENYNDIKVGDIIEAF 873          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRUSU (Translation initiation factor IF-2 OS=Brucella suis GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  A+ +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +YDD   GD+IEAF      RT
Sbjct:  757 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDSAEQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVAEVPSGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 958          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_CLOBA1.171e-4344.61Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_HAMD51.529e-4345.81Translation initiation factor IF-2 OS=Hamiltonella... [more]
IF2_ENTCL1.529e-4344.33Translation initiation factor IF-2 OS=Enterobacter... [more]
IF2_DESDA1.529e-4344.50Translation initiation factor IF-2 OS=Desulfovibri... [more]
IF2_BRUC21.529e-4345.05Translation initiation factor IF-2 OS=Brucella can... [more]
IF2_ALKOO1.529e-4343.84Translation initiation factor IF-2 OS=Alkaliphilus... [more]
IF2_PSYIN1.997e-4343.84Translation initiation factor IF-2 OS=Psychromonas... [more]
IF2_LEGPH1.997e-4344.22Translation initiation factor IF-2 OS=Legionella p... [more]
IF2_GEOUR1.997e-4347.18Translation initiation factor IF-2 OS=Geobacter ur... [more]
IF2_BRUSU1.997e-4345.05Translation initiation factor IF-2 OS=Brucella sui... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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