EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRUSI (Translation initiation factor IF-2 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 1 
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  A+ +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +YDD   GD+IEAF      RT
Sbjct:  757 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDSAEQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVAEVPSGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 958
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRUME (Translation initiation factor IF-2 OS=Brucella melitensis GN=infB PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 1 
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  A+ +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +YDD   GD+IEAF      RT
Sbjct:  757 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDSAEQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVAEVPSGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 958
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRUAB (Translation initiation factor IF-2 OS=Brucella abortus GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 1 
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  A+ +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +YDD   GD+IEAF      RT
Sbjct:  757 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDSAEQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVAEVPSGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 958
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRUA2 (Translation initiation factor IF-2 OS=Brucella abortus (strain 2308) GN=infB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.997e-43
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 1 
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  A+ +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV +G ECG+   +YDD   GD+IEAF      RT
Sbjct:  757 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDSAEQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVAEVPSGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 958
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SHEON (Translation initiation factor IF-2 OS=Shewanella oneidensis GN=infB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.609e-43
Identity = 88/203 (43.35%), Postives = 133/203 (65.52%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V++LN+++K DVQGS+EA+  +L  L  D V +  + +  G ++ +D  LA AS AI++GFNV+A    +   +N+ V++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   +  G L+SLRR K++V EV  G+ECG+G  +Y+D   GD IE F +++  RT
Sbjct:  682 VKELNIVLKADVQGSLEAITDSLMGLSTDEVKVNIIARGVGALTETDATLAAASNAIMVGFNVRADAQARKTIENESVDLRYYSVIYNLIDEVKAAMTGMLSPEFKQQIIGLAEVRDVFKSPKLGAIAGCMVTEGTIKRSAPIRVLRDNVVIFEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDQIEVFETVEVART 884
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SALTY (Translation initiation factor IF-2 OS=Salmonella typhimurium GN=infB PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.609e-43
Identity = 89/203 (43.84%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V ++N+++K DVQGS+EA+  +L  L  D V +K +    G I+ +D  LA AS AI++GFNV+A  S +   +++ +++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ +RT
Sbjct:  688 VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SALTI (Translation initiation factor IF-2 OS=Salmonella typhi GN=infB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.609e-43
Identity = 89/203 (43.84%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V ++N+++K DVQGS+EA+  +L  L  D V +K +    G I+ +D  LA AS AI++GFNV+A  S +   +++ +++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ +RT
Sbjct:  688 VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SALSV (Translation initiation factor IF-2 OS=Salmonella schwarzengrund (strain CVM19633) GN=infB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.609e-43
Identity = 89/203 (43.84%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V ++N+++K DVQGS+EA+  +L  L  D V +K +    G I+ +D  LA AS AI++GFNV+A  S +   +++ +++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ +RT
Sbjct:  688 VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SALPC (Translation initiation factor IF-2 OS=Salmonella paratyphi C (strain RKS4594) GN=infB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.609e-43
Identity = 89/203 (43.84%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V ++N+++K DVQGS+EA+  +L  L  D V +K +    G I+ +D  LA AS AI++GFNV+A  S +   +++ +++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ +RT
Sbjct:  688 VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SALPB (Translation initiation factor IF-2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=infB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.609e-43
Identity = 89/203 (43.84%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V ++N+++K DVQGS+EA+  +L  L  D V +K +    G I+ +D  LA AS AI++GFNV+A  S +   +++ +++R Y VIY+LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ +RT
Sbjct:  688 VHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRT 890
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_BRUSI1.997e-4345.05Translation initiation factor IF-2 OS=Brucella sui... [more]
IF2_BRUME1.997e-4345.05Translation initiation factor IF-2 OS=Brucella mel... [more]
IF2_BRUAB1.997e-4345.05Translation initiation factor IF-2 OS=Brucella abo... [more]
IF2_BRUA21.997e-4345.05Translation initiation factor IF-2 OS=Brucella abo... [more]
IF2_SHEON2.609e-4343.35Translation initiation factor IF-2 OS=Shewanella o... [more]
IF2_SALTY2.609e-4343.84Translation initiation factor IF-2 OS=Salmonella t... [more]
IF2_SALTI2.609e-4343.84Translation initiation factor IF-2 OS=Salmonella t... [more]
IF2_SALSV2.609e-4343.84Translation initiation factor IF-2 OS=Salmonella s... [more]
IF2_SALPC2.609e-4343.84Translation initiation factor IF-2 OS=Salmonella p... [more]
IF2_SALPB2.609e-4343.84Translation initiation factor IF-2 OS=Salmonella p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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