EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROMP (Translation initiation factor IF-2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=infB PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.945e-52
Identity = 98/202 (48.51%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP++ V ++ LL A G+I+ +D+DLA AS ++I+GFN       K  AD   V+IR Y VIY L++D+++AMEGLLE    +  +G AEVRA F+ G G +AGC +  GKL + C +RV+R  K +  G LDSL+R K++VKEVN G ECGVG   +  W EGDII AF  + +KRT
Sbjct:  965 LKELNLILKADVQGSVEAILGSLEQLPKNEVQVRVLLSAPGEITETDIDLAAASGSVIIGFNTSLASGAKRAADANDVDIREYEVIYKLLEDIQSAMEGLLEPDLVEESLGQAEVRATFAVGKGAIAGCYIQSGKLQRNCSLRVLRSDKVIFEGNLDSLKRSKDDVKEVNTGFECGVGCDKFSTWSEGDIISAFKFVTKKRT 1166          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM0 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9301) GN=infB PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.168e-51
Identity = 99/202 (49.01%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP++ V ++ L  A G+I+ +D+DLA AS ++I+GFN       K  AD   V+IR Y VIY L++D++ AMEGLLE    +  +G AEVRA FS G G +AGC +  GKL + C +RVIR  K +  G LDSL+R K++VKEVN G ECGVG   +  W EGD+IEAF  + +KRT
Sbjct:  910 LKELNLILKADVQGSVEAILGSLEQLPKNEVQVRVLFSAPGEITETDIDLAAASGSVIIGFNTSLASGAKRAADANDVDIREYEVIYKLLEDIQLAMEGLLEPDLVEESLGQAEVRATFSVGKGAIAGCYIQTGKLQRNCSLRVIRSEKVIFEGNLDSLKRAKDDVKEVNTGFECGVGCDKFSSWIEGDVIEAFKFVTKKRT 1111          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNS9 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain CC9902) GN=infB PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.572e-51
Identity = 102/201 (50.75%), Postives = 141/201 (70.15%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC V+ GKL + C +RV R  + V+ G LDSLRR K++VKEV  G ECGVGA  + +WEEGD IEAF  + ++R
Sbjct:  972 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEITETDVDLAAASGAVIIGFNTSMASGAKKAADATGVDVRDYDVIYKLLEDIQLAMEGLLEPELIEEALGEAEVRAVFTIGKSAVAGCYVNTGKLHRNCRVRVHRGKQVVYTGDLDSLRRNKDDVKEVATGFECGVGADRFANWEEGDRIEAFKMVTQRR 1172          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNSC (Translation initiation factor IF-2 OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.877e-50
Identity = 101/201 (50.25%), Postives = 140/201 (69.65%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC V+ GKL + C +RV R  + V+ G LDSLRR K++VKEV  G ECGVG   + +WEEGD IEAF  + ++R
Sbjct:  900 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEITETDVDLAAASGAVIVGFNTSMASGAKKAADATGVDVRDYDVIYKLLEDIQMAMEGLLEPELVEEALGEAEVRAVFTIGKSAVAGCYVTTGKLHRNCRVRVHRGKQVVYEGDLDSLRRNKDDVKEVATGFECGVGTDRFANWEEGDRIEAFKMVTQRR 1100          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNPX (Translation initiation factor IF-2 OS=Synechococcus sp. (strain WH8102) GN=infB PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.410e-50
Identity = 99/201 (49.25%), Postives = 140/201 (69.65%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+++ +DVDLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC V+ GKL + C +RV R  + V+ G LDSLRR K++VKEV  G ECGVG   + +WE+GD IEAF  + ++R
Sbjct:  446 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEVTETDVDLAAASGAVIVGFNTSMASGAKKAADATGVDVRDYDVIYKLLEDIQLAMEGLLEPELVEEALGEAEVRAVFTIGKSAVAGCYVTTGKLQRNCKVRVHRGSQVVYDGDLDSLRRNKDDVKEVATGFECGVGTDRFANWEDGDRIEAFKMVTQRR 646          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNR3 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain RCC307) GN=infB PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.372e-50
Identity = 98/202 (48.51%), Postives = 138/202 (68.32%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+   L+ LPQ  V ++ LL A G+++ +DVDLA AS A+I+GFN       +  A+  GV++R Y VIY L++D++ AMEGLLE    + P+G AEVRA+FS G   VAGC V+ G + + C IRV R  + V  G LDSL+R+K +VKEVN G ECG G   + DW+EGD +EAF  + ++RT
Sbjct:  902 LKELNLILKADVQGSVEAILGMLEQLPQGEVQVRVLLSAPGEVTETDVDLAAASGAVIVGFNTTLASGARRAAELAGVDVRDYNVIYKLLEDIQAAMEGLLEPELVESPLGEAEVRAVFSIGKSAVAGCYVTSGSIQRNCKIRVHRGKQLVFSGDLDSLKRMKNDVKEVNTGFECGFGCDRFADWQEGDRVEAFAMVTQRRT 1103          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM4 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9211) GN=infB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.093e-49
Identity = 98/202 (48.51%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGSIEA+  +L+ LP+D V ++ LL A G+++ +DVDLA AS A+I+GFN       K  AD   V++R Y VIY L++D++ AMEGLLE    +  +G AEVRAIFS G   VAGC ++ GKL + C +RV R  + V  G LDSLRR K+ VK+V +G ECGVG   + +W+EGDII+ +  + ++RT
Sbjct:  909 LKELNIILKADVQGSIEAILGSLEQLPKDEVQVRVLLSAPGEVTETDVDLAAASGAVIVGFNTSMASGAKKAADANSVDVRDYEVIYKLLEDIQLAMEGLLEPDMVEESLGEAEVRAIFSIGKSAVAGCYITNGKLQRNCKVRVKRGSQIVFEGDLDSLRRNKDVVKDVGSGFECGVGCDRFANWKEGDIIQGYKLVTKRRT 1110          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNPW (Translation initiation factor IF-2 OS=Synechococcus sp. (strain WH7803) GN=infB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.865e-49
Identity = 98/201 (48.76%), Postives = 140/201 (69.65%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +DVDLA AS A+I+GFN       +  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC V+ GKL + C +RV R  + V+ G LDSLRR K++VKEV  G ECGVG   + +W++GD IEAF  + ++R
Sbjct:  919 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEITETDVDLAAASGAVIVGFNTSMASGARKAADANGVDVRDYDVIYKLLEDIQLAMEGLLEPELVEEALGEAEVRAVFTIGKSAVAGCYVTTGKLQRNCKVRVHRGKEIVYAGDLDSLRRNKDDVKEVATGFECGVGTDRFANWQDGDRIEAFKMVTQRR 1119          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROMT (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain NATL2A) GN=infB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.436e-49
Identity = 98/201 (48.76%), Postives = 139/201 (69.15%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +D+DLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRAIFS G   VAGC V+ GK+ + C  RV R  + V  G LDSL+R K++VK+V+ G ECG+G   + +WEEGD IEAF  + ++R
Sbjct:  979 LKELNIILKADVQGSLEAILGSLEQLPKDEVQVRVLLSAPGEITETDIDLAAASGAVIVGFNTSMASGAKRAADANGVDVREYEVIYKLLEDIQLAMEGLLEPEMIEEALGVAEVRAIFSIGKSAVAGCYVTNGKIQRNCRARVKRGKQIVFEGDLDSLKRNKDDVKDVSTGFECGIGCDRFANWEEGDQIEAFKLVTQRR 1179          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROMM (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9313) GN=infB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.436e-49
Identity = 99/202 (49.01%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC ++ GKL + C +RV R  + V  G LDSLRR K++VKEV  G ECG+G   + +WEE DIIEA   + ++RT
Sbjct:  920 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEITETDVDLAAASGAVIVGFNTSMASGAKRAADATGVDVRDYDVIYKLLEDIQMAMEGLLEPELVEESLGEAEVRAVFTIGKSAVAGCYITAGKLQRNCRVRVRRAKQVVFEGDLDSLRRNKDDVKEVATGFECGIGCDRFANWEERDIIEAHKLVTKRRT 1121          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_PROMP8.945e-5248.51Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_PROM01.168e-5149.01Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_SYNS97.572e-5150.75Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNSC2.877e-5050.25Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNPX6.410e-5049.25Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_SYNR38.372e-5048.51Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_PROM41.093e-4948.51Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_SYNPW1.865e-4948.76Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_PROMT2.436e-4948.76Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_PROMM2.436e-4949.01Translation initiation factor IF-2 OS=Prochlorococ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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