EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM3 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain MIT 9303) GN=infB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.436e-49
Identity = 99/202 (49.01%), Postives = 139/202 (68.81%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC ++ GKL + C +RV R  + V  G LDSLRR K++VKEV  G ECG+G   + +WEE DIIEA   + ++RT
Sbjct:  919 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEITETDVDLAAASGAVIVGFNTSMASGAKRAADATGVDVRDYDVIYKLLEDIQMAMEGLLEPELVEESLGEAEVRAVFTIGKSAVAGCYITTGKLQRNCRVRVRRAKQVVFEGDLDSLRRNKDDVKEVATGFECGIGCDRFANWEERDIIEAHKLVTKRRT 1120          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROM1 (Translation initiation factor IF-2 OS=Prochlorococcus marinus (strain NATL1A) GN=infB PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.256e-49
Identity = 97/201 (48.26%), Postives = 138/201 (68.66%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K D QGS+EA+  +L+ LP+D V ++ LL A G+I+ +D+DLA AS A+I+GFN       K  AD  GV++R Y VIY L++D++ AMEGLLE    +  +G AEVRAIFS G   VAGC V+ GK+ + C  RV R  + V  G LDSL+R K++VK+V+ G ECG+G   + +WEEGD IEAF  + ++R
Sbjct:  979 LKELNIILKADAQGSLEAILGSLEQLPKDEVQVRVLLSAPGEITETDIDLAAASGAVIVGFNTSMASGAKRAADANGVDVRDYEVIYKLLEDIQLAMEGLLEPEMIEEALGVAEVRAIFSIGKSAVAGCYVTNGKIQRNCRARVKRGKQIVFEGDLDSLKRNKDDVKDVSTGFECGIGCDRFANWEEGDQIEAFKLVTQRR 1179          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROMA (Translation initiation factor IF-2 OS=Prochlorococcus marinus GN=infB PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.594e-48
Identity = 96/201 (47.76%), Postives = 138/201 (68.66%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+I+ +DVDLA AS A+I+GFN       K  AD   V++R Y VIY L++D++ AMEGLLE    +  IG AEVRAIF+ G   VAGC ++ GKL + C +RV R  + V  G LDSLRR K+ VK+V++G ECG+G   + +W+EGD IE +  + ++R
Sbjct:  930 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEITETDVDLAAASGAVIIGFNTSMASGAKKAADANSVDVRDYEVIYKLLEDIQLAMEGLLEPDLVEEKIGEAEVRAIFTIGKSAVAGCYITNGKLQRNCKVRVKRADQIVFNGDLDSLRRNKDVVKDVSSGFECGIGCDRFANWKEGDTIEGYKLVTQRR 1130          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SYNS3 (Translation initiation factor IF-2 OS=Synechococcus sp. (strain CC9311) GN=infB PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.836e-48
Identity = 93/201 (46.27%), Postives = 138/201 (68.66%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS+EA+  +L+ LP+D V ++ LL A G+++ +DVDLA AS A+I+GFN       K  AD   V++R Y VIY L++D++ AMEGLLE    +  +G AEVRA+F+ G   VAGC V+ GKL + C +RV R  + V  G LDSLRR K++VK+V  G ECG+G   + +W++GDI+E +  + ++R
Sbjct:  925 LKELNLILKADVQGSVEAILGSLEQLPKDEVQVRVLLSAPGEVTETDVDLAAASGAVIVGFNTSMASGAKRAADANSVDVRDYDVIYKLLEDIQLAMEGLLEPELVEESLGEAEVRAVFTIGKSAVAGCYVTTGKLQRNCKVRVRRGKEIVFAGDLDSLRRNKDDVKDVATGFECGIGCDRFANWKDGDIVEGYKLVTQRR 1125          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PELTS (Translation initiation factor IF-2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=infB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.280e-47
Identity = 100/206 (48.54%), Postives = 144/206 (69.90%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRKRT 612
            ++++L +I+K DVQGS+EA+RQAL+ L  D V +  +    G I+ +DV LA AS AII+GFNV+   + +  A+N+ V++RLYRVIYD I+D++ AM GLLE    +V +G AE+R IF SS  G +AGC V EGK+ +   +RVIRDG  VH G L+SL+R K++V+EV  G ECG+    +++ +EGDIIEAF   +I+R+ T
Sbjct:  768 QIKELGIIIKADVQGSVEALRQALERLSTDEVRVNIIHGGVGAITETDVMLASASNAIIIGFNVRPDVNARKAAENEKVDVRLYRVIYDAIEDVKAAMSGLLEPEYREVTLGRAEIRKIFRSSKIGNIAGCYVLEGKIERDASVRVIRDGIVVHEGKLESLKRFKDDVREVVQGYECGIALEKFNEIQEGDIIEAFTVEAIKRQLT 973          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GLOVI (Translation initiation factor IF-2 OS=Gloeobacter violaceus GN=infB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.280e-47
Identity = 93/202 (46.04%), Postives = 136/202 (67.33%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++L +I++ DVQGS+EA+R +L+ LPQD V L+ L  A G++S +D+DLA AS A+IL F+       +  A+  GV++R Y VIY L++D++ AMEGLL+    +  +G AEVR +F  G G+VAGC V EGKL++   +RV R  + V  G +DSL+R KE+ KEV  G ECGVG+  +  W+ GD+IE F  + +KRT
Sbjct:  722 LKELALIIRADVQGSVEAIRASLEKLPQDKVQLRVLQAAAGEVSETDIDLAAASNAVILSFSTTLASGARQAAEQAGVDVREYDVIYKLLEDIQLAMEGLLDPELVEEALGGAEVRQVFPVGKGQVAGCYVKEGKLLRNAQMRVRRGKEVVFEGHVDSLKRFKEDAKEVATGFECGVGSDKFASWQPGDLIECFRMVTQKRT 923          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_THETN (Translation initiation factor IF-2 OS=Thermoanaerobacter tengcongensis GN=infB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.978e-47
Identity = 93/195 (47.69%), Postives = 140/195 (71.79%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V++LNVI+K DVQGS+EA+R++L+ L  + V ++ +  A G I+ +DV LA AS AII+GFNV+   + K  A+ + VEI+LYR+IYD I+D++ AM+G+LE   ++V +G AEVRA+F   G G VAGC V  GK+ +   +R++RDG  ++ G + SL+R K++V+EV  G ECG+G   ++D +EGDIIEA+
Sbjct:  506 VKELNVIIKADVQGSVEALRKSLEELSNEEVRIRVIHGAVGAITETDVMLASASNAIIIGFNVRPETNAKALAEKEKVEIKLYRIIYDAIEDVKAAMKGMLEPKYKEVELGRAEVRAVFKIPGVGNVAGCYVLNGKIARNADVRIVRDGIVIYEGKIASLKRFKDDVREVQQGFECGIGIEKFNDIKEGDIIEAY 700          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_MOOTA (Translation initiation factor IF-2 OS=Moorella thermoacetica (strain ATCC 39073) GN=infB PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.978e-47
Identity = 104/203 (51.23%), Postives = 141/203 (69.46%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRK 606
            V++LN+++K DVQGS+EA+R AL+ L    V +  L    G I+ +DV LA ASKAII+GFNV+   +V+  A+  GVEIRLYRVIY++IDD++ AM GLLE  E +V +G AEVRA F    +G VAGC V+EGK+      RVIRDG  V  G ++SL+R K++V+EV  G ECGVG   ++D +EGD+IEA+    IQR+
Sbjct:  700 VKELNLVIKGDVQGSVEALRGALEQLSTSEVKVNLLHGGVGAITETDVMLAAASKAIIIGFNVRPEANVRKAAEEAGVEIRLYRVIYEVIDDVKAAMSGLLEPEEREVILGRAEVRATFKVPKAGTVAGCFVTEGKIQNRALARVIRDGVVVFEGRIESLKRFKDDVREVAQGYECGVGLEKFNDIKEGDVIEAYTIEEIQRE 902          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CALS8 (Translation initiation factor IF-2 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=infB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.079e-47
Identity = 98/196 (50.00%), Postives = 141/196 (71.94%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            ++++L VI+K DVQGS+EA++ A++ L  D VT+K +  A G I+ SDV LA AS AII+GFNV+      + A+ + V+IR+YR+IYD+I+D++ AM+GLLE V ++V IG AEVR IF S S G +AGC V +GK+ +    R+IRDG  V+ G L SL+R K++V+EV AG ECG+    ++D +EGDI+EAF
Sbjct:  656 QLKELRVIIKADVQGSVEALKSAIERLSNDKVTVKVIHAAVGAITESDVTLASASDAIIIGFNVRPEVGAMSLAEKEKVDIRMYRIIYDVINDIKAAMKGLLEPVYKEVIIGHAEVRQIFKSSSVGTIAGCYVLDGKITRTSNARIIRDGVVVYEGKLASLKRFKDDVREVAAGYECGMTFEKFNDIKEGDIVEAF 851          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ALKMQ (Translation initiation factor IF-2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=infB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.663e-47
Identity = 95/202 (47.03%), Postives = 140/202 (69.31%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LN+I+K DVQGS++AV+Q+L+ L  D V+L+ +    G I+ SDV LA AS AII GFNV+   +    +  + V+IR YR+IY+ I+D+  AM G+L+   ++V +G AEVRA F   G+G VAG  ++EGK+++   IR++RDG  VH G + SLRR K++VKEVN G ECG+G   ++D +EGDIIEA+   + KR
Sbjct:  505 IKELNIIVKADVQGSVQAVKQSLEKLSNDKVSLRTIHGGVGAITESDVMLAAASNAIITGFNVRPTSTATAISKKEKVDIRTYRIIYNAIEDIEAAMVGMLDPEFKEVDLGKAEVRAAFKVPGAGVVAGSYITEGKILRSASIRLVRDGIVVHEGAIGSLRRFKDDVKEVNTGYECGIGIDKFNDVKEGDIIEAYTMEEIKR 706          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_PROM32.436e-4949.01Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_PROM19.256e-4948.26Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_PROMA4.594e-4847.76Translation initiation factor IF-2 OS=Prochlorococ... [more]
IF2_SYNS37.836e-4846.27Translation initiation factor IF-2 OS=Synechococcu... [more]
IF2_PELTS2.280e-4748.54Translation initiation factor IF-2 OS=Pelotomaculu... [more]
IF2_GLOVI2.280e-4746.04Translation initiation factor IF-2 OS=Gloeobacter ... [more]
IF2_THETN2.978e-4747.69Translation initiation factor IF-2 OS=Thermoanaero... [more]
IF2_MOOTA2.978e-4751.23Translation initiation factor IF-2 OS=Moorella the... [more]
IF2_CALS85.079e-4750.00Translation initiation factor IF-2 OS=Caldicellulo... [more]
IF2_ALKMQ8.663e-4747.03Translation initiation factor IF-2 OS=Alkaliphilus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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