EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_THEP3 (Translation initiation factor IF-2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=infB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.478e-46
Identity = 92/195 (47.18%), Postives = 142/195 (72.82%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V++LN+I+K DVQGS+EA++++++ L  + V +K +  A G I+ +DV LA AS AII+GFNV+   + K  A+ + V+I+LYR+IYD+I+D++ AM+GLLE   ++V +G AEVRA+F   G G VAGC V  GK+++   +R+IR+G  V+ G + SL+R K++V+EV  G ECG+G   ++D +EGDIIEA+
Sbjct:  490 VKELNIIIKADVQGSVEALKKSIEDLSNEEVRIKVIHGAVGAITETDVMLASASNAIIIGFNVRPETNAKNLAEKEKVDIKLYRIIYDVIEDIKAAMKGLLEPKYKEVELGRAEVRAVFRVPGVGNVAGCYVLSGKILRNADVRIIRNGIVVYEGKIASLKRFKDDVREVQQGFECGIGIEKFNDIKEGDIIEAY 684          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GEOLS (Translation initiation factor IF-2 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=infB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.478e-46
Identity = 96/195 (49.23%), Postives = 137/195 (70.26%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ LNVI+K DVQGS+EAV ++L+ L  + V L  +  A G I+ +DV+LA AS AII+GF+++     +  A+ +GV+IRLY VIYD +DD+R AMEGLLE V ++  +G AE+R IFS    G VAGC + +GK+++   +R++RD   V+ G L +LRR K++VKEV  G ECG+G  +Y+D + GDIIEAF
Sbjct:  746 VKDLNVIVKADVQGSVEAVAESLRKLSTEAVRLNVIHTAVGAITETDVNLATASNAIIIGFSIRPEVKAQAMAEKEGVDIRLYNVIYDAVDDVRKAMEGLLEPVFKEKYLGRAEIREIFSVPKVGNVAGCYIQDGKILRNAQVRLLRDNVVVYQGKLGTLRRFKDDVKEVATGYECGMGLENYNDIKVGDIIEAF 940          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_THEPX (Translation initiation factor IF-2 OS=Thermoanaerobacter sp. (strain X514) GN=infB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.292e-46
Identity = 93/195 (47.69%), Postives = 141/195 (72.31%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V++LN+I+K DVQGS+EA++++++ L  + V +K +  A G I+ +DV LA AS AII+GFNV+   + K  A+ + V+I+LYR+IY+ I+D++ AM+GLLE   ++V +G AEVRA+F   G G VAGC V  GK+++   IRV+RDG  V+ G + SL+R K++V+EV  G ECG+G   ++D +EGDIIEA+
Sbjct:  491 VKELNIIIKADVQGSVEALKKSIEDLSNEEVRIKVIHGAVGAITETDVMLASASNAIIIGFNVRPETNAKNLAEKEKVDIKLYRIIYEAIEDIKAAMKGLLEPKYKEVELGRAEVRAVFRVPGVGNVAGCYVLSGKILRNSDIRVVRDGIVVYEGKIASLKRFKDDVREVQQGFECGIGIDRFNDIKEGDIIEAY 685          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PHOLL (Translation initiation factor IF-2 OS=Photorhabdus luminescens subsp. laumondii GN=infB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.334e-46
Identity = 94/203 (46.31%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+R+AL+ L  D V +K +    G I+ +D  LA AS AIILGFNV+A  S +   +N+ +++R Y VIY LID+++ AM G+L    +Q  +G AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KR+
Sbjct:  705 VSELNIVLKSDVQGSCEAIREALEQLSTDEVKVKIIGSGVGGITETDATLAAASNAIILGFNVRADASARRVVENESLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIMGLAEVRDVFKSPKFGAIAGCMVTEGTIKRNNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEVKRS 907          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_IDILO (Translation initiation factor IF-2 OS=Idiomarina loihiensis GN=infB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.334e-46
Identity = 93/203 (45.81%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS+EA+  AL  L  D V +  +    G I+ +D+ LA AS AI++GFNV+A  + +   + + V++R Y VIYDLID+++ AM G+L+   +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V+EV  G+ECG+G  +Y+D +EGD IE F +IQ +RT
Sbjct:  693 VAELNIVLKSDVQGSLEAISDALTKLSTDEVKVNIIGSGVGGITETDISLASASNAIVVGFNVRAEAAARKLVEQESVDLRYYSVIYDLIDEVKAAMSGMLQPEFKQQIIGLAEVRDVFKSPKIGAIAGCMVTEGVVKRSAPIRVLRDNVVIYEGELESLRRFKDDVQEVRNGMECGIGVKNYNDVKEGDQIEVFETIQIERT 895          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICBR (Translation initiation factor IF-2 OS=Rickettsia bellii (strain RML369-C) GN=infB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.251e-45
Identity = 93/203 (45.81%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DV GS+EA+  +L  LP D V L+ L    G I+ SDV LA AS AII+GFNV+A  + KT A+ + VEIR Y +IYDL+DD++  M G+L+ +  +  IGS E+R IF+ +  G++AG  V+ G + KG G+R++RD   +H G L +L+R KE VKEV  G ECG+   +Y+D  EGD +E F  IQ K+
Sbjct:  624 KIKELPLIIKGDVHGSVEAIAGSLLKLPNDEVKLRILHSGVGPITESDVSLAHASSAIIVGFNVRAGANAKTAAEKEKVEIRYYSIIYDLLDDVKAIMSGMLDPIIREQYIGSVEIRQIFNITKIGKIAGSYVTRGIIKKGAGVRLLRDNIVIHEGKLKTLKRFKEEVKEVREGYECGIAFENYEDIREGDTVEVFELIQEKK 826          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICB8 (Translation initiation factor IF-2 OS=Rickettsia bellii (strain OSU 85-389) GN=infB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.251e-45
Identity = 93/203 (45.81%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DV GS+EA+  +L  LP D V L+ L    G I+ SDV LA AS AII+GFNV+A  + KT A+ + VEIR Y +IYDL+DD++  M G+L+ +  +  IGS E+R IF+ +  G++AG  V+ G + KG G+R++RD   +H G L +L+R KE VKEV  G ECG+   +Y+D  EGD +E F  IQ K+
Sbjct:  624 KIKELPLIIKGDVHGSVEAIAGSLLKLPNDEVKLRILHSGVGPITESDVSLAHASSAIIVGFNVRAGANAKTAAEKEKVEIRYYSIIYDLLDDVKAIMSGMLDPIIREQYIGSVEIRQIFNITKIGKIAGSYVTRGIIKKGAGVRLLRDNIVIHEGKLKTLKRFKEEVKEVREGYECGIAFENYEDIREGDTVEVFELIQEKK 826          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GEOSL (Translation initiation factor IF-2 OS=Geobacter sulfurreducens GN=infB PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.251e-45
Identity = 91/195 (46.67%), Postives = 133/195 (68.21%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ LN I+K DVQGS+EAV ++L+ L  D V L  +  + G I+ +DV+LA AS AIILGFNV+       +A+ +GV+IRLY +IYD ++D++ AMEGLLE    +  +G AEVR +FS    G VAGC + +GK+++   +R++RD   ++ G + SLRR K++VKEV  G ECG+G  +Y+D + GD+IE F
Sbjct:  680 VKDLNAIVKADVQGSVEAVSESLRKLSTDAVRLNVIHSSVGAITETDVNLASASNAIILGFNVRPEPKASAHAEKEGVDIRLYNIIYDAVEDIKKAMEGLLEPTLREKYLGRAEVREVFSVPKVGNVAGCYIQDGKMIRNAQVRLLRDNVVIYEGKMSSLRRFKDDVKEVATGYECGIGLENYNDIKVGDVIEDF 874          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PECCP (Translation initiation factor IF-2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=infB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.134e-45
Identity = 94/203 (46.31%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +LQ L  D V +K +    G I+ +D  LA AS AIILGFNV+A  S +   +++ +++R Y VIYDL+D+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F +I+ KRT
Sbjct:  695 VSELNIVLKSDVQGSCEAISDSLQKLSTDEVKVKIVGSGVGGITETDATLAAASNAIILGFNVRADASARRIVESESLDLRYYSVIYDLLDEVKQAMSGMLAPEYKQEIIGLAEVRDVFKSPKFGAIAGCMVTEGIVKRHNKIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRPGDMIEVFETIEIKRT 897          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ERWCT (Translation initiation factor IF-2 OS=Erwinia carotovora subsp. atroseptica GN=infB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.134e-45
Identity = 96/203 (47.29%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +LQ L  D V +K +    G I+ +D  LA AS AIILGFNV+A  S +   + + +++R Y VIYDLID+++ AM G+L    +Q  IG AEVR +F S   G VAGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F +I+ KRT
Sbjct:  696 VSELNIVLKSDVQGSCEAISDSLQKLSTDEVKVKIVGSGVGGITETDATLAAASNAIILGFNVRADASARRVVEAESLDLRYYSVIYDLIDEVKQAMSGMLAPEYKQEIIGLAEVRDVFKSPKFGAVAGCMVTEGIVKRHNKIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRPGDMIEVFETIEIKRT 898          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_THEP31.478e-4647.18Translation initiation factor IF-2 OS=Thermoanaero... [more]
IF2_GEOLS1.478e-4649.23Translation initiation factor IF-2 OS=Geobacter lo... [more]
IF2_THEPX3.292e-4647.69Translation initiation factor IF-2 OS=Thermoanaero... [more]
IF2_PHOLL7.334e-4646.31Translation initiation factor IF-2 OS=Photorhabdus... [more]
IF2_IDILO7.334e-4645.81Translation initiation factor IF-2 OS=Idiomarina l... [more]
IF2_RICBR1.251e-4545.81Translation initiation factor IF-2 OS=Rickettsia b... [more]
IF2_RICB81.251e-4545.81Translation initiation factor IF-2 OS=Rickettsia b... [more]
IF2_GEOSL1.251e-4546.67Translation initiation factor IF-2 OS=Geobacter su... [more]
IF2_PECCP2.134e-4546.31Translation initiation factor IF-2 OS=Pectobacteri... [more]
IF2_ERWCT2.134e-4547.29Translation initiation factor IF-2 OS=Erwinia caro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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