EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PARD8 (Translation initiation factor IF-2 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=infB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.699e-40
Identity = 88/202 (43.56%), Postives = 134/202 (66.34%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++LNVI+K DV GS+EA+  +L  L  + + +  + +A G IS SDV LA AS AII+GF V+     +  A+ +GVEIRLY +IYD I+++++AMEG+L    ++      EV+ +F  +  G VAGCMV EGK+ +   IR+IRDG  ++ G L SL+R K++ KEV AGL+CG+   +++D + GD+IEA+   + K+T
Sbjct:  771 QELNVIVKGDVDGSVEALSDSLIRLSTEEIQVNVIHKAVGQISESDVVLAAASNAIIIGFQVRPSLQARRNAEKEGVEIRLYSIIYDAIEEVKSAMEGMLSPEIKEEITAYVEVQQVFKITKVGTVAGCMVKEGKIKRTNKIRLIRDGIVIYAGELGSLKRFKDDAKEVVAGLDCGLNITNFNDIQVGDMIEAYEETEIKKT 972          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEPCP (Translation initiation factor IF-2 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=infB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.699e-40
Identity = 85/200 (42.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            L +I+K DVQGS EA+  +L  L  D V ++ +  A G IS SDV+LA+ASKA+I+GFNV+A    +  AD   V++R Y VIYD +D++++AM G+L   + +  IG+AE+R +F ++  G +AG MV+ G + + C  R++R+   ++ G +DS+RR+K++VKEV  G ECG+   +Y D  EGD +E F   +  RT
Sbjct:  791 LALIIKADVQGSQEALAASLLKLSTDEVKVQIVHAAVGGISESDVNLALASKAVIIGFNVRADAGARKLADGNDVDLRYYNVIYDAVDEIKSAMSGMLAPEQREEAIGTAEIRTVFVATKIGTIAGSMVTSGLVRRNCRFRLLRNNIVIYTGEVDSVRRLKDDVKEVKEGFECGIKLKNYTDIAEGDQLEFFEIKEVART 990          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BURCM (Translation initiation factor IF-2 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=infB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.699e-40
Identity = 85/203 (41.87%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +  A G IS +DV+LA ASKA+I+GFN +A    +  A++ G++IR Y +IYD +D+++ AM G+L   + +V  G  EVR +F     G VAGCMV++G + +   +RV+R+   +  G L+SL+R K++VKEV  G ECG+   +++D  EGD  E F   +  RT
Sbjct:  768 VQNLPLIIKADVQGSQEALVQSLLKLSTDEVRVQIVHSAVGGISENDVNLATASKAVIIGFNTRADAQARKLAESNGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVITGMVEVRQVFKVPKIGTVAGCMVTDGIVKRSSSVRVLRNNVVIFTGELESLKRFKDDVKEVKQGFECGMSVKNFNDVTEGDQFEVFEVTEVART 970          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_AQUAE (Translation initiation factor IF-2 OS=Aquifex aeolicus GN=infB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.699e-40
Identity = 85/202 (42.08%), Postives = 132/202 (65.35%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++L +++K D  GS+EA++++L+ L  + V +K +  A G I+ +D+ LA AS AI++GFN +     +   + + V++RLY VIY+ I+D++ A+ GLLE ++++  IG AEVRA F     G VAGC V  GKLV+G   R+IR+G  ++ G ++SL+R KE+V+EV AG ECGV   DY+D + GD IE +     K T
Sbjct:  603 KELRIVLKTDTMGSLEALKKSLEELSNEKVQVKIIHGAVGGITENDIMLAKASGAIVIGFNTRPDPKARELMEKEKVDVRLYGVIYEAIEDVKKALVGLLEPIKKEEVIGMAEVRATFKIKKVGTVAGCYVLNGKLVRGAKARLIREGVVIYDGEIESLKRFKEDVQEVTAGYECGVKLKDYNDVKVGDQIECYEIRYEKPT 804          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ACISJ (Translation initiation factor IF-2 OS=Acidovorax sp. (strain JS42) GN=infB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.699e-40
Identity = 82/203 (40.39%), Postives = 133/203 (65.52%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+  +L  L  + + ++ +    G IS SDV+LA+ASKAI++GFNV+A    +  A+   V+IR Y +IYD +D+++ AM G+L   + +  IG+AE+R +F +S  G VAG  ++ G++ + C  R++RD   ++ G ++S+RR+K++VKEV  G ECG+   +Y+D +EGD +E F   +  RT
Sbjct:  740 VQTLPLIIKADVQGSQEALAASLLKLSTEEIRVQIVYSGVGGISESDVNLAIASKAIVIGFNVRADAQARKTAEGNDVDIRYYNIIYDAVDEVKAAMSGMLAPEQREEAIGTAEIRTVFVASKIGTVAGSYITSGQVTRNCKFRLLRDNIVIYTGDVESVRRMKDDVKEVKEGFECGIKLKNYNDIKEGDQLEFFEIKEIART 942          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ACIAD (Translation initiation factor IF-2 OS=Acinetobacter sp. (strain ADP1) GN=infB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.699e-40
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V  +NV++K DV+G++EA+  AL  L  D V ++ +    G I+ SDV LA +S+A++LGFNV+A  + +  +D  G++IR Y +IY+LIDD++NAM G L     +  +G AEVR +F SS  G  AGCMV EG L +   IRV+RD   V  G L+SLRR KE V+EV AG+ECG+    Y D +  D IE ++    KR+
Sbjct:  696 VPTVNVVLKADVRGTLEALTAALNELSMDEVRVRVISSGVGAITESDVTLAESSEAVLLGFNVRADTTARQKSDQDGIDIRYYSIIYELIDDVKNAMSGKLAPEHRETILGVAEVREVFHSSKFGAAAGCMVLEGMLHRNKPIRVLRDDVVVFQGELESLRRYKEVVEEVRAGMECGLAVKGYKDIKAKDKIEVYDVQLIKRS 898          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_VESOH (Translation initiation factor IF-2 OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 86/202 (42.57%), Postives = 127/202 (62.87%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +  +NV++K DV+GS +A+ +AL+ L  D V +K +    G I+ +D+ LA  S A++LGFNV+A    +  ADN+GV +  Y +IY+LI+D++  M GLL     +  IG A V+ IF S   G +AGCMV EG + +   IRV+RD   +  G L+SLRR K++V EV +G ECG+G  +Y D + GD IE F  ++R R
Sbjct:  612 ISTVNVLLKADVRGSAQALIEALEELSTDEVRVKVVSSGVGGINNTDITLAATSSALVLGFNVRADAVARKTADNEGVRVEYYSIIYNLINDVKAIMSGLLSPELSENIIGIASVKNIFKSQKMGDIAGCMVDEGMVKRDSLIRVLRDSVVIFDGKLESLRRFKDDVNEVKSGTECGIGVLNYTDVQPGDQIEIFERVERAR 813          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_VEREI (Translation initiation factor IF-2 OS=Verminephrobacter eiseniae (strain EF01-2) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 83/203 (40.89%), Postives = 130/203 (64.04%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +  A G IS SD++LA+ASKA+++GFNV+A    +  A+  GV +  Y +IYD +D++R AM G+L   + +  IG+AE+R +F++   G VAG  ++ G + +    R++R    VH G +DS++R+K++V+EV  G ECG+   +Y D  EGD +E F+  Q  RT
Sbjct:  787 VKMLPIIVKADVQGSQEALAQSLLKLSTDEVKVQLVYAAVGAISESDINLAIASKAVVIGFNVRADAGARKLAEGNGVALHYYSIIYDAVDELRVAMSGMLAPEQREEIIGTAEIRTVFTASKIGTVAGSYITSGMVHRNARFRLLRANVVVHTGEVDSIKRLKDDVREVKEGFECGIKLKNYSDILEGDQLEFFDIKQIART 989          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_VARPS (Translation initiation factor IF-2 OS=Variovorax paradoxus (strain S110) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 82/203 (40.39%), Postives = 131/203 (64.53%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +    G IS SD++LA+ASKAI++GFNV+A    +  A+  GV++  Y +IYD +D+++ AM G+L     +  IGSAE+R +F +S  G VAG  ++ G + +    R++RD   ++ G +DS++R+K++V+EV  G ECG+   +Y+D +EGD +E F   +  RT
Sbjct:  781 VQTLRIIIKADVQGSQEALAQSLLKLATDEVKVQIVYAGVGGISESDINLAIASKAIVIGFNVRADAGARKLAEGNGVQLNYYSIIYDAVDEIKVAMSGMLAPERREEIIGSAEIRTVFVASKIGTVAGSYITSGSVNRSAHFRLLRDNVVIYTGEVDSIKRMKDDVREVREGFECGIKLKNYNDIKEGDQLEFFEIKEIART 983          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEAE (Translation initiation factor IF-2 OS=Pseudomonas aeruginosa GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 83/202 (41.09%), Postives = 133/202 (65.84%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ +L  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV+EG + +   IRV+RD   +  G L+SLRR K++V EV AG+ECG+G   Y+D + GD IE F  ++  R+
Sbjct:  638 KTLNIVLKADVRGSLEALQGSLSGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEAEGLDMRYYNVIYDIIEDVKKALTGMLGSDLRENILGIAEVRDVFRSPKFGAIAGCMVTEGMVHRNRPIRVLRDDVVIFEGELESLRRFKDDVAEVRAGMECGIGVKSYNDVKVGDKIEVFEKVEVARS 839          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_PARD82.699e-4043.56Translation initiation factor IF-2 OS=Parabacteroi... [more]
IF2_LEPCP2.699e-4042.50Translation initiation factor IF-2 OS=Leptothrix c... [more]
IF2_BURCM2.699e-4041.87Translation initiation factor IF-2 OS=Burkholderia... [more]
IF2_AQUAE2.699e-4042.08Translation initiation factor IF-2 OS=Aquifex aeol... [more]
IF2_ACISJ2.699e-4040.39Translation initiation factor IF-2 OS=Acidovorax s... [more]
IF2_ACIAD2.699e-4044.83Translation initiation factor IF-2 OS=Acinetobacte... [more]
IF2_VESOH3.526e-4042.57Translation initiation factor IF-2 OS=Vesicomyosoc... [more]
IF2_VEREI3.526e-4040.89Translation initiation factor IF-2 OS=Verminephrob... [more]
IF2_VARPS3.526e-4040.39Translation initiation factor IF-2 OS=Variovorax p... [more]
IF2_PSEAE3.526e-4041.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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