EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEAB (Translation initiation factor IF-2 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 83/202 (41.09%), Postives = 133/202 (65.84%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ +L  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV+EG + +   IRV+RD   +  G L+SLRR K++V EV AG+ECG+G   Y+D + GD IE F  ++  R+
Sbjct:  638 KTLNIVLKADVRGSLEALQGSLSGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEAEGLDMRYYNVIYDIIEDVKKALTGMLGSDLRENILGIAEVRDVFRSPKFGAIAGCMVTEGMVHRNRPIRVLRDDVVIFEGELESLRRFKDDVAEVRAGMECGIGVKSYNDVKVGDKIEVFEKVEVARS 839          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEA8 (Translation initiation factor IF-2 OS=Pseudomonas aeruginosa (strain LESB58) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 83/202 (41.09%), Postives = 133/202 (65.84%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ +L  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV+EG + +   IRV+RD   +  G L+SLRR K++V EV AG+ECG+G   Y+D + GD IE F  ++  R+
Sbjct:  638 KTLNIVLKADVRGSLEALQGSLSGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEAEGLDMRYYNVIYDIIEDVKKALTGMLGSDLRENILGIAEVRDVFRSPKFGAIAGCMVTEGMVHRNRPIRVLRDDVVIFEGELESLRRFKDDVAEVRAGMECGIGVKSYNDVKVGDKIEVFEKVEVARS 839          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEA7 (Translation initiation factor IF-2 OS=Pseudomonas aeruginosa (strain PA7) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 83/202 (41.09%), Postives = 133/202 (65.84%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ +L  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV+EG + +   IRV+RD   +  G L+SLRR K++V EV AG+ECG+G   Y+D + GD IE F  ++  R+
Sbjct:  635 KTLNIVLKADVRGSLEALQGSLSGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEAEGLDMRYYNVIYDIIEDVKKALTGMLGSDLRENILGIAEVRDVFRSPKFGAIAGCMVTEGMVHRNRPIRVLRDDVVIFEGELESLRRFKDDVAEVRAGMECGIGVKSYNDVKVGDKIEVFEKVEVARS 836          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BURTA (Translation initiation factor IF-2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 86/203 (42.36%), Postives = 128/203 (63.05%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  + V ++ +  A G IS SDV+LA ASKA+I+GFN +A    +  A+  G++IR Y +IYD +D+++ AM G+L   + +V  G  EVR +F     G VAGCMV++G + +   +RV+R+   +  G LDSL+R K++VKEV  G ECG+   +++D  EGD  E F   +  RT
Sbjct:  773 VQNLPLIIKADVQGSQEALVQSLLKLSTNEVRVQIVHSAVGGISESDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVVTGMVEVRQVFKVPKVGAVAGCMVTDGVVKRSSSVRVLRNNVVIFTGELDSLKRFKDDVKEVKQGFECGMSIKNFNDIVEGDQFEVFEVTEVART 975          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BURS3 (Translation initiation factor IF-2 OS=Burkholderia sp. (strain 383) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 85/203 (41.87%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +  A G IS +DV+LA ASKA+I+GFN +A    +  A++ G++IR Y +IYD +D+++ AM G+L   + +V  G  EVR +F     G VAGCMV++G + +   +RV+R+   +  G L+SL+R K++VKEV  G ECG+   +++D  EGD  E F   +  RT
Sbjct:  769 VQNLPLIIKADVQGSQEALVQSLLKLSTDEVRVQIVHSAVGGISENDVNLATASKAVIIGFNTRADAQARKLAESNGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVITGMVEVRQVFKVPKIGAVAGCMVTDGIVKRSSSVRVLRNNVVIFTGELESLKRFKDDVKEVKQGFECGMSVKNFNDIVEGDQFEVFEVTEVART 971          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BURM1 (Translation initiation factor IF-2 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=infB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.526e-40
Identity = 86/203 (42.36%), Postives = 128/203 (63.05%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +  A G IS SDV+LA ASKA+I+GFN +A    +  A+  G++IR Y +IYD +D+++ AM G+L   + +V  G  EVR +F     G VAGCMV++G + +   +RV+R+   +  G L+SL+R K++VKEV  G ECG+   +++D  EGD  E F   +  RT
Sbjct:  766 VQNLPLIIKADVQGSQEALVQSLLKLSTDEVRVQIVHSAVGGISESDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVVTGMVEVRQVFKVPKVGTVAGCMVTDGIVKRSSSVRVLRNNVVIFTGELESLKRFKDDVKEVKQGFECGMSVKNFNDILEGDQFEVFEVTEVART 968          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RHOPS (Translation initiation factor IF-2 OS=Rhodopseudomonas palustris (strain BisB5) GN=infB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.604e-40
Identity = 87/197 (44.16%), Postives = 124/197 (62.94%), Query Frame = 1
Query:   22 VIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            +I+K DVQGS+EA+  +L+ L  D V  + L    G IS SDV LA    A+ILGF+V+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+A++  IF+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV +G ECG+   +Y D   GD+IE +   +IQR
Sbjct:  685 LIVKADVQGSLEAILGSLEKLGTDEVAARILHAGVGGISESDVTLAEGFSAVILGFSVRANKEAAAAAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNAQILEIFNISKVGKVAGCRVTDGTVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFENYTDMRAGDVIECYRVETIQR 881          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RHOP2 (Translation initiation factor IF-2 OS=Rhodopseudomonas palustris (strain HaA2) GN=infB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.604e-40
Identity = 87/197 (44.16%), Postives = 124/197 (62.94%), Query Frame = 1
Query:   22 VIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            +I+K DVQGS+EA+  +L+ L  D V  + L    G IS SDV LA    A+ILGF+V+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+A++  IF+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV +G ECG+   +Y D   GD+IE +   +IQR
Sbjct:  688 LIVKADVQGSLEAILGSLEKLGTDEVAARILHAGVGGISESDVTLAEGFSAVILGFSVRANKEAAAAAKRNGIEIRYYNIIYDLVDDIKKAMSGLLAPTLRETMLGNAQILEIFNISKVGKVAGCRVTDGTVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFENYTDMRAGDVIECYRVETIQR 884          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RHILO (Translation initiation factor IF-2 OS=Rhizobium loti GN=infB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.604e-40
Identity = 87/203 (42.86%), Postives = 125/203 (61.58%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA  S A I+GFNV+A    +  A   G+EIR Y +IY+L+DD++ A+ GLL     +  IG+AE+  IF  +  G++AGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV  G ECG+   +Y+D   GDIIE F      RT
Sbjct:  657 LKEFPLVIKGDVQGSIEAINAALDKLGTDEVRARIVHAGAGAITESDVSLAETSGAAIIGFNVRANVQARAAAAAAGIEIRYYSIIYNLVDDVKAALSGLLSPERRETFIGNAEILEIFDITKVGKIAGCRVTEGKVERGAGVRLIRDNVVIHEGTLKTLKRFKDEVSEVPGGQECGMAFQNYEDMRVGDIIECFRVEMVTRT 859          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_METSB (Translation initiation factor IF-2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=infB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.604e-40
Identity = 84/202 (41.58%), Postives = 129/202 (63.86%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGS+EA+   L+ L  D V  + +    G I+ SDV LA AS A+++GFNV+A    +  A+ +G+EIR Y +IY+L+DD++ AM GLL     +  +G+AE+  +F  S  G+VAGC V++G++ +G  +R+IRD   VH G L +L+R K+ VKEV AG ECG+    Y D   GD+IE +   + +RT
Sbjct:  684 KEFPLVIKADVQGSLEAIVATLEKLNTDEVAARIIHAGVGGITESDVTLAEASGAVLIGFNVRAHKEGRQLAEQQGLEIRYYNIIYNLVDDVKAAMSGLLAPTLREDMLGNAEILEVFHISKVGKVAGCRVTDGRVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVVAGQECGMAFEHYQDMRVGDVIECYRVEEIQRT 885          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_PSEAB3.526e-4041.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_PSEA83.526e-4041.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_PSEA73.526e-4041.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_BURTA3.526e-4042.36Translation initiation factor IF-2 OS=Burkholderia... [more]
IF2_BURS33.526e-4041.87Translation initiation factor IF-2 OS=Burkholderia... [more]
IF2_BURM13.526e-4042.36Translation initiation factor IF-2 OS=Burkholderia... [more]
IF2_RHOPS4.604e-4044.16Translation initiation factor IF-2 OS=Rhodopseudom... [more]
IF2_RHOP24.604e-4044.16Translation initiation factor IF-2 OS=Rhodopseudom... [more]
IF2_RHILO4.604e-4042.86Translation initiation factor IF-2 OS=Rhizobium lo... [more]
IF2_METSB4.604e-4041.58Translation initiation factor IF-2 OS=Methylocella... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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