EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_MACCJ (Translation initiation factor IF-2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 88/202 (43.56%), Postives = 137/202 (67.82%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVR-AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+   + K  A+ +GV++RL+R+IY +I+++ +AM+G+L+   E+  IG AEVR  I  S  G VAG  V++GK+ +   +R+IRDG  V+ G +D+L+R K++V+EV  G ECG+   +++D +EGDI EAF   + KR
Sbjct:  524 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLASASNGIIIGFNVRPDVNAKRAAEAEGVDMRLHRIIYKVIEEIESAMKGMLDPEFEEKVIGQAEVRQTINISKVGTVAGSYVTDGKITRDSQVRIIRDGIVVYEGQVDALKRFKDDVREVAQGYECGITIENFNDIKEGDIFEAFVMEEIKR 725          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEPBL (Translation initiation factor IF-2 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 88/202 (43.56%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++L VI+K DV+GS EA++++L+ L    V L  +    G I   DV LA AS A+I+GF+V+A       A+ + V+I+ Y +IY ++D+++ AMEGLLE  + +  IG+AE+R IF  S  G +AGCMV+ GK+ K   +RVI DG T   G L SL+RVK++V +V +G ECG+    Y+D++ GD IEA+N    KR
Sbjct:  660 LKELKVIIKADVRGSAEAIKESLEKLSTPEVKLNVIQSGAGAIVDMDVMLASASNALIIGFHVRANPKTIALAEKEQVQIKYYNIIYQVVDEIKLAMEGLLEPEKIEEVIGTAEIREIFKVSKIGNIAGCMVTSGKIQKSANVRVISDGVTKFDGKLKSLKRVKDDVNDVVSGFECGIQVDGYNDFKVGDTIEAYNVTVIKR 861          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_LEPBJ (Translation initiation factor IF-2 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 88/202 (43.56%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++L VI+K DV+GS EA++++L+ L    V L  +    G I   DV LA AS A+I+GF+V+A       A+ + V+I+ Y +IY ++D+++ AMEGLLE  + +  IG+AE+R IF  S  G +AGCMV+ GK+ K   +RVI DG T   G L SL+RVK++V +V +G ECG+    Y+D++ GD IEA+N    KR
Sbjct:  648 LKELKVIIKADVRGSAEAIKESLEKLSTPEVKLNVIQSGAGAIVDMDVMLASASNALIIGFHVRANPKTIALAEKEQVQIKYYNIIYQVVDEIKLAMEGLLEPEKIEEVIGTAEIREIFKVSKIGNIAGCMVTSGKIQKSANVRVISDGVTKFDGKLKSLKRVKDDVNDVVSGFECGIQVDGYNDFKVGDTIEAYNVTVIKR 849          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_DEHSC (Translation initiation factor IF-2 OS=Dehalococcoides sp. (strain CBDB1) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 83/196 (42.35%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSG-RVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFN 591
            +++LN+I+K DVQGS+E ++ +L+ L  D + +       G+++ SDV LA+AS  +I+GF+     + +  AD + ++IR Y +IY LI+D+  A++GLLE   ++V  G AEVRA+F S     +AGCMV EGKLVK   +R++R G+ +     +SLRR KE+VKEV AG ECGVG  D++++++ DI+E ++
Sbjct:  393 IKELNIILKTDVQGSLEPIKDSLEKLSTDKIKININRSGAGNVTESDVMLAMASGGLIIGFSTGIETNAQRLADAEDIDIRHYDIIYKLIEDVDKALQGLLEPTIKEVIDGRAEVRAVFESTKKLSIAGCMVLEGKLVKNSQVRLLRGGEVIVDAPSNSLRRFKEDVKEVVAGYECGVGLKDFNEFQKSDILEFYH 588          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_DEHSB (Translation initiation factor IF-2 OS=Dehalococcoides sp. (strain BAV1) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 83/196 (42.35%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSG-RVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFN 591
            +++LN+I+K DVQGS+E ++ +L+ L  D + +       G+++ SDV LA+AS  +I+GF+     + +  AD + ++IR Y +IY LI+D+  A++GLLE   ++V  G AEVRA+F S     +AGCMV EGKLVK   +R++R G+ +     +SLRR KE+VKEV AG ECGVG  D++++++ DI+E ++
Sbjct:  393 IKELNIILKTDVQGSLEPIKDSLEKLSTDKIKININRSGAGNVTESDVMLAMASGGLIIGFSTGIETNAQRLADAEDIDIRHYDIIYKLIEDVDKALQGLLEPTIKEVIDGRAEVRAVFESTKKLSIAGCMVLEGKLVKNSQVRLLRGGEVIVDAPSNSLRRFKEDVKEVVAGYECGVGLKDFNEFQKSDILEFYH 588          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CHLCH (Translation initiation factor IF-2 OS=Chlorobium chlorochromatii (strain CaD3) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 81/202 (40.10%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++LNVI+K D  GSI+A+   L  +  D V ++ + Q  G I+ +DV LA AS AII+GF V+   + K  A+ + ++IR Y VIY +++D+  A+EG+L     +  +GS E+R IF     G V GC V EGK+ +   +R++RDG  ++ G L +L+R K++VKEV++G ECG+   +YDD + GD++EA+  +++KR
Sbjct:  819 MKELNVIIKADTDGSIQALADGLMKIQNDEVKVQLIHQGVGQITETDVLLAAASDAIIIGFRVRPNVNAKKLAEKEDLDIRFYSVIYHVLEDVETALEGMLSPELHEESLGSIEIRQIFRVPKVGNVGGCYVLEGKVPRDAKVRLLRDGVQIYEGQLAALKRFKDDVKEVDSGYECGLSLKNYDDIKVGDVVEAYRIVEKKR 1020          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BURVG (Translation initiation factor IF-2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 85/203 (41.87%), Postives = 128/203 (63.05%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +  A G IS +DV+LA ASKA+I+GFN +A    +  A+  G++IR Y +IYD +D+++ AM G+L   + +V  G  EVR +F     G VAGCMV++G + +   +RV+R+   +  G L+SL+R K++VKEV  G ECG+   +++D  EGD  E F   +  RT
Sbjct:  771 VQNLPLIIKADVQGSQEALVQSLLKLSTDEVRVQIVHSAVGGISENDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVITGMVEVRQVFKVPKIGTVAGCMVTDGIVKRSSSVRVLRNNVVIFTGELESLKRFKDDVKEVKQGFECGMSVKNFNDIVEGDQFEVFEVTEVART 973          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_AGRVS (Translation initiation factor IF-2 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=infB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 83/202 (41.09%), Postives = 125/202 (61.88%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGS+EA+  AL  L  D V  + +    G I+ SD+ LA AS A I+GFNV+A    +  ++  G EIR Y +IYDL+DD++ AM GLL     +  +G+AE+  +F+ + +G+VAGC V EGK+ +G G+R++RD   +H G L +L+R K+ V +V  G ECG+   +Y+D   GD IE F      RT
Sbjct:  724 KEFPLVIKADVQGSVEAIVAALDKLGTDEVRARIVHSGAGAITESDISLAEASNAAIIGFNVRANVQARAASERTGTEIRYYNIIYDLVDDVKAAMSGLLSPERRETFLGNAEILEVFNITKTGKVAGCRVVEGKVERGAGVRLVRDNVVIHEGKLKTLKRFKDEVADVPMGQECGMAFENYEDIRAGDTIECFRVEHITRT 925          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEU2 (Translation initiation factor IF-2 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 83/202 (41.09%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA+  AL  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV EG + +   IRV+R+   +  G L+SLRR K++  EV AG+ECG+G   Y+D + GD IE F  +Q  R+
Sbjct:  639 KTLNIVLKSDVRGSLEALNGALNGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEQEGLDMRYYNVIYDIIEDVKKALTGMLGSDVRENILGIAEVRDVFRSPKFGAIAGCMVLEGTVYRNRPIRVLREDIVIFEGELESLRRFKDDAAEVRAGMECGIGVKSYNDVKVGDKIEVFEKVQVARS 840          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEPF (Translation initiation factor IF-2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 83/202 (41.09%), Postives = 131/202 (64.85%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ AL  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV EG + +   IRV+R+   +  G L+SLRR K++  EV AG+ECG+G   Y+D + GD IE F  +Q  R+
Sbjct:  635 KTLNIVLKSDVRGSLEALQGALNGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEQEGLDMRYYNVIYDIIEDVKKALTGMLGSDVRENILGVAEVRDVFRSPKFGAIAGCMVIEGTVHRNRPIRVLREDIVIFEGELESLRRFKDDASEVRAGMECGIGVKSYNDVKVGDKIEVFEKVQVARS 836          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_MACCJ7.854e-4043.56Translation initiation factor IF-2 OS=Macrococcus ... [more]
IF2_LEPBL7.854e-4043.56Translation initiation factor IF-2 OS=Leptospira b... [more]
IF2_LEPBJ7.854e-4043.56Translation initiation factor IF-2 OS=Leptospira b... [more]
IF2_DEHSC7.854e-4042.35Translation initiation factor IF-2 OS=Dehalococcoi... [more]
IF2_DEHSB7.854e-4042.35Translation initiation factor IF-2 OS=Dehalococcoi... [more]
IF2_CHLCH7.854e-4040.10Translation initiation factor IF-2 OS=Chlorobium c... [more]
IF2_BURVG7.854e-4041.87Translation initiation factor IF-2 OS=Burkholderia... [more]
IF2_AGRVS7.854e-4041.09Translation initiation factor IF-2 OS=Agrobacteriu... [more]
IF2_PSEU21.026e-3941.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_PSEPF1.026e-3941.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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