EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_NITMU (Translation initiation factor IF-2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 80/195 (41.03%), Postives = 130/195 (66.67%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ L++I+K DVQGS EA+  ALQ L  D V +  +    G I+ SD++LA+ASKA+++GFN +A    +   ++ GV++R Y +IY+ +D+++ A+ G++    ++   G  E+R +F  S  G VAGC+V EG + +G  +RVIR+G+ +H G LDSL+R K++VKEV AG ECG+   +++D + GD +E +
Sbjct:  673 VKVLSLIIKADVQGSYEALTHALQQLSTDEVKVNIIHSGVGAITESDINLALASKAVVIGFNSRADAVARKLINSAGVDVRYYSIIYEAVDEIKAALSGMMAPERKENITGLLEIREVFRISKVGAVAGCLVQEGFVRRGSLVRVIRNGQVIHTGELDSLKRFKDDVKEVRAGFECGLSLKNFNDIQVGDQLETY 867          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CHLPD (Translation initiation factor IF-2 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 81/202 (40.10%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++L+VI+K D  GSI+A+   L  +  + V ++ + Q  G I+ +DV LA AS AII+GF V+   + K  A+ + +++R Y VIY +++D+  A+EG+L     +  +GS E+R +F     G V GC   EGK+ +   +R++RDG  V+ G LD+LRR K++VKEV+AG ECG+   +YDD + GDI+EA+  +++KR
Sbjct:  788 MKELSVIIKADTDGSIQALADGLMKIHNEEVKVQIIHQGVGQITETDVLLAAASDAIIIGFRVRPNVNAKKLAEKEDLDVRFYSVIYHVLEDVEKALEGMLSPELHEESLGSLEIRQVFRVPKVGNVGGCYALEGKVFRDSKVRLLRDGVQVYDGQLDTLRRFKDDVKEVDAGYECGLSLKNYDDIKVGDIVEAYKIVEKKR 989          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BURCJ (Translation initiation factor IF-2 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 85/203 (41.87%), Postives = 128/203 (63.05%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V ++ +  A G IS +DV+LA ASKA+I+GFN +A    +  A+  G++IR Y +IYD +D+++ AM G+L   + +V  G  EVR +F     G VAGCMV++G + +   +RV+R+   +  G L+SL+R K++VKEV  G ECG+   +++D  EGD  E F   +  RT
Sbjct:  768 VQNLPLIIKADVQGSQEALVQSLLKLSTDEVRVQIVHSAVGGISENDVNLATASKAVIIGFNTRADAQARKLAEANGIDIRYYNIIYDAVDEVKAAMSGMLAPEKREVITGMVEVRQVFKVPKVGTVAGCMVTDGIVKRSSSVRVLRNNVVIFTGELESLKRFKDDVKEVKQGFECGMSVKNFNDIIEGDQFEVFEVTEVART 970          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BLOPB (Translation initiation factor IF-2 OS=Blochmannia pennsylvanicus (strain BPEN) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 89/200 (44.50%), Postives = 133/200 (66.50%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQD-NVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            V +LN+I+K D +GS EA+R++L+ L    +VT+K L  + G I+ +DV LA AS A+I+GFNV+A  + +   +   +++R Y VIYDLID+++ A+ G+L    +   IG A+VR +F S   G VAGCMV EG + +   IRVIRD   VH G L+SLRR K++V EV +G+ECG+G  +Y +   GD+IE F+ ++
Sbjct:  688 VSELNLIVKSDTKGSSEAIRESLENLSTGGDVTIKILSSSIGGITETDVALAAASNAVIVGFNVRADPTARRIIEADQLDVRYYSVIYDLIDEVKQAVHGMLAPRYKHEIIGLAKVRNVFRSPKYGNVAGCMVVEGMIKRYKKIRVIRDNIVVHEGELESLRRFKDDVNEVRSGIECGIGIKNYKNIHSGDMIEVFDMVK 887          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BACSK (Translation initiation factor IF-2 OS=Bacillus clausii (strain KSM-K16) GN=infB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.026e-39
Identity = 86/202 (42.57%), Postives = 133/202 (65.84%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            V+ +NVI+K DVQGS+EA++ +L+ +    V +  +    G I+ SD+ LA AS AI++GFNV+   + K  A+ + V+IRL+RVIY+ ID++  AM+G L+   E+  IG  EVR  F  S  G +AG  V+EGK+ +   +R+IRDG  ++ G L++L+R K++ KEV AG ECG+    ++D +EGD+IEA+   + KR
Sbjct:  559 VKDINVIIKADVQGSVEAMKGSLEKIDVAGVKVNIIHTGAGAITESDIILASASNAIVIGFNVRPDVNAKRVAEAENVDIRLHRVIYNAIDEIEQAMKGALDPEFEEKVIGQVEVRTTFKVSKVGTIAGSYVTEGKITRNSSVRLIRDGIVIYEGELNALKRYKDDAKEVQAGYECGITLDKFNDIKEGDMIEAYVMEEVKR 760          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEFS (Translation initiation factor IF-2 OS=Pseudomonas fluorescens (strain SBW25) GN=infB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.340e-39
Identity = 82/202 (40.59%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA+  AL  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV EG + +   IRV+R+   +  G L+SLRR K++  EV AG+ECG+G   Y+D + GD IE +  +Q  R+
Sbjct:  639 KTLNIVLKSDVRGSLEALNGALNGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEQEGLDMRYYNVIYDIIEDVKKALTGMLGSDVRENILGVAEVRDVFRSPKFGAIAGCMVIEGTVYRNRPIRVLREDIVIFEGELESLRRFKDDASEVRAGMECGIGVKSYNDVKAGDKIEVYEKVQVARS 840          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSEF5 (Translation initiation factor IF-2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=infB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.340e-39
Identity = 83/202 (41.09%), Postives = 131/202 (64.85%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ AL  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV EG + +   IRV+R+   +  G L+SLRR K++  EV AG+ECG+G   Y+D + GD IE F  +Q  R+
Sbjct:  636 KTLNIVLKSDVRGSLEALQGALNGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEQEGLDMRYYNVIYDIIEDVKKALTGMLGSDVRENILGVAEVRDVFRSPKFGAIAGCMVIEGVVHRNRPIRVLREDIVIFEGELESLRRFKDDASEVRAGMECGIGVKSYNDVKVGDKIEVFEKVQVARS 837          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSE14 (Translation initiation factor IF-2 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=infB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.340e-39
Identity = 83/202 (41.09%), Postives = 131/202 (64.85%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA++ AL  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV EG + +   IRV+R+   +  G L+SLRR K++  EV AG+ECG+G   Y+D + GD IE F  +Q  R+
Sbjct:  641 KTLNIVLKSDVRGSLEALQGALGGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEQEGLDMRYYNVIYDIIEDVKKALTGMLGSDVRENILGIAEVRDVFRSPKFGAIAGCMVLEGTVYRNRPIRVLREDIVIFEGELESLRRFKDDAAEVRAGMECGIGVKSYNDVKVGDKIEVFEKVQVARS 842          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRASB (Translation initiation factor IF-2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=infB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.340e-39
Identity = 85/201 (42.29%), Postives = 124/201 (61.69%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            ++  +++K DVQGS+EA+  +L+ L  D V  + L    G IS SDV LA    A I+GF+V+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+A++  +F+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV AG ECG+    Y D   GD+IE +   +IQR
Sbjct:  719 KEFPLVIKADVQGSLEAILGSLEKLGTDEVAARILHAGVGGISESDVTLAEGFNAAIIGFSVRANKEAAALAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNAQILEVFNISKVGKVAGCRVTDGTVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQAGQECGMAFESYGDMRVGDVIECYRVETIQR 919          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ROSCS (Translation initiation factor IF-2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=infB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 85/204 (41.67%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGR-VAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++LN+I+K DVQGSI A+  AL  L  D V ++ + + TG I+ SDV+LA+AS AII+GFN +   + +  A+  GV+IR Y +IY L +D++ AM G+LE    +V  G AEVR  F   +   VAG  V+EGK+ +   +RV+R+G  +H G + SL+R K++V+EV AG ECG+    ++D   GD +E +   + +RT
Sbjct:  534 KIKELNIILKADVQGSIGAIEHALSQLNTDEVQIRIIHRGTGTITESDVNLAIASHAIIIGFNARPDPAARRQAEQYGVDIRFYNIIYQLTEDIKKAMIGMLEPEYREVTEGFAEVRTTFRLPTREIVAGLYVTEGKITRQYNVRVLRNGVVIHDGKIASLKRFKDDVREVQAGYECGLIVEGFNDITPGDTMEFYRRERVERT 737          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_NITMU1.026e-3941.03Translation initiation factor IF-2 OS=Nitrosospira... [more]
IF2_CHLPD1.026e-3940.10Translation initiation factor IF-2 OS=Chlorobium p... [more]
IF2_BURCJ1.026e-3941.87Translation initiation factor IF-2 OS=Burkholderia... [more]
IF2_BLOPB1.026e-3944.50Translation initiation factor IF-2 OS=Blochmannia ... [more]
IF2_BACSK1.026e-3942.57Translation initiation factor IF-2 OS=Bacillus cla... [more]
IF2_PSEFS1.340e-3940.59Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_PSEF51.340e-3941.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_PSE141.340e-3941.09Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_BRASB1.340e-3942.29Translation initiation factor IF-2 OS=Bradyrhizobi... [more]
IF2_ROSCS1.750e-3941.67Translation initiation factor IF-2 OS=Roseiflexus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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