EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSYCK (Translation initiation factor IF-2 OS=Psychrobacter cryohalolentis (strain K5) GN=infB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 90/203 (44.33%), Postives = 127/203 (62.56%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V  LN+++K DV+GS+EA+  AL  L  D V ++ +    G IS SDV LA +S+A++LGFNV+A  + +  +D+  ++IR Y VIY LIDD++ AM G+L     +  +G A+VR +F SS  G  AGCMV EG + +   IRV+R+ + +  G L SLRR KE+V EV  G+ECG+    Y D E GD IE F   +  RT
Sbjct:  706 VSYLNIVLKTDVRGSLEALLAALNELSTDEVKVRVISSGVGPISESDVTLAESSEAVLLGFNVRADATARRKSDSANMDIRYYSVIYGLIDDVKAAMSGMLAPEHREKILGVADVREVFRSSKFGAAAGCMVVEGTIYRNKPIRVLRNDQVIFTGQLQSLRRYKEDVNEVRTGMECGLAVRGY-DVEAGDKIEVFEIQEFART 907          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSYA2 (Translation initiation factor IF-2 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=infB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 90/203 (44.33%), Postives = 126/203 (62.07%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V  LN+++K DV+GS+EA+  AL  L  D V ++ +    G IS SDV LA +S+A++LGFNV+A  + +  +D   ++IR Y VIY LIDD++ AM G+L     +  +G A+VR +F SS  G  AGCMV EG + +   IRV+R+ + +  G L SLRR KE+V EV  G+ECG+    Y D E GD IE F   +  RT
Sbjct:  706 VSYLNIVLKTDVRGSLEALLSALNELSTDEVKVRVISSGVGPISESDVTLAESSEAVLLGFNVRADATARRKSDTANMDIRYYSVIYGLIDDVKAAMSGMLAPEHREKILGVADVREVFRSSKFGAAAGCMVVEGTIYRNKPIRVLRNDQVIFTGQLQSLRRYKEDVNEVRTGMECGLAVRGY-DVEAGDKIEVFEIQEFART 907          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_NITWN (Translation initiation factor IF-2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=infB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 86/197 (43.65%), Postives = 122/197 (61.93%), Query Frame = 1
Query:   22 VIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            +I+K DVQGS+EA+  +L+ L  D V  + L    G IS SDV LA    A I+GF+V+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+AE+  +F+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV +G ECG+    Y D   GD+IE +   +IQR
Sbjct:  673 LIIKADVQGSLEAILGSLEKLGTDEVAARILHAGVGGISESDVTLAEGFNAAIIGFSVRANKEAAAAAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNAEILEVFNISKVGKVAGCRVTDGSVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFESYGDMRVGDVIECYRVETIQR 869          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_NITOC (Translation initiation factor IF-2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=infB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 84/201 (41.79%), Postives = 128/201 (63.68%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRK 606
            +R LN+++K DVQGS EA+  +L  L  D   +K +    G I+ +DV+LAVAS A+I+GFNV+A  + +     KG+++  Y VIY+ ID+++ A+ G+L+    +  IG A V  +F S   G +AGC+V EG + +   IRV+RD   V  G L+SLRR K++V+EV AG ECG+G  DY D + GD IE +  ++++
Sbjct:  642 IRALNLVIKADVQGSAEALSDSLTKLSTDKARVKVVAAGVGGINETDVNLAVASNAVIIGFNVRADAAARRLIAEKGIDLHYYSVIYNAIDEIKGALIGILDPEYREEIIGLARVDDVFRSPKLGAIAGCLVIEGSVRRNNPIRVLRDNIVVFEGQLESLRRFKDDVQEVRAGTECGIGVKDYKDVKVGDQIEVYERVRKE 842          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_HELHP (Translation initiation factor IF-2 OS=Helicobacter hepaticus GN=infB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 82/203 (40.39%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDL-AVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ L +I+K D QGS+EA++ +L+ L  D V +  +    G IS SD+ L A ++ ++ILGFNV+  GSVK  A   GVEI+ Y +IY L+DD++  + GL+  + E+   G AEVR  F+    G +AGCMV +G + +G  +R+IRDG  VH G + SL+R K++ KEV+ G ECG+   +++D + GD+ E +  I + +
Sbjct:  678 LKTLPLIIKADTQGSLEAIKASLEKLSNDEVRINIIGFGVGGISESDITLCATSTNSLILGFNVRPTGSVKAKAKELGVEIKTYSIIYALLDDIKALLSGLMSPIVEEENTGQAEVRETFNIPKVGTIAGCMVVDGSIQRGIKVRLIRDGVVVHTGAISSLKRFKDDAKEVSKGYECGIMLENHNDIKVGDVFETYKEITKTK 880          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STRM5 (Translation initiation factor IF-2 OS=Stenotrophomonas maltophilia (strain R551-3) GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 87/200 (43.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS++A+ QAL  L  +++ +  +    G I+ SD + A ASKA ++GFNV+A  S +   ++ GV++R + +IYD+ID ++    GLL     +  IG AEVR +F SS  G VAG MV EG + +   IRV+RD   +  G L+SLRR KENV+EV  G ECG+    Y+D + GD IE F  I+  RT
Sbjct:  683 LNLVIKADVQGSVQALSQALVALSNEDIRINVIHSGVGGITESDANSAAASKATVIGFNVRADASARRIIESNGVDLRYFSIIYDVIDQVKQVASGLLGVEIREEIIGIAEVRDVFRSSKLGAVAGSMVIEGVVKRNKPIRVLRDSVVIFEGELESLRRFKENVEEVRNGTECGIAVKAYNDVKPGDQIECFERIEVPRT 882          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RHOPB (Translation initiation factor IF-2 OS=Rhodopseudomonas palustris (strain BisB18) GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 87/197 (44.16%), Postives = 122/197 (61.93%), Query Frame = 1
Query:   22 VIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            +I+K DV GS+EA+  +L+ L  D VT + L    G IS SDV LA    A I+GFNV+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+A +  +F+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV +G ECG+   +Y D   GDIIE +   +IQR
Sbjct:  682 LIIKADVAGSLEAILGSLEKLGTDEVTARILHAGVGGISESDVTLAEGFNAAIIGFNVRAHKEAAAAAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNALILEVFNISKVGKVAGCRVTDGSVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFENYGDMRAGDIIECYRVETIQR 878          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PSESM (Translation initiation factor IF-2 OS=Pseudomonas syringae pv. tomato GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 82/202 (40.59%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            + LN+++K DV+GS+EA+  AL  L  D V ++ +    G I+ SD +LA+AS A++ GFNV+A    +   + +G+++R Y VIYD+I+D++ A+ G+L +   +  +G AEVR +F S   G +AGCMV EG + +   IRV+R+   +  G L+SLRR K++  +V AG+ECG+G   Y+D + GD IE F  +Q  R+
Sbjct:  639 KTLNIVLKSDVRGSLEALNGALNGLGNDEVQVRVVGGGVGGITESDANLALASNAVLFGFNVRADAGARKIVEQEGLDMRYYNVIYDIIEDVKKALTGMLGSDVRENILGIAEVRDVFRSPKFGAIAGCMVLEGTVYRNRPIRVLREDIVIFEGELESLRRFKDDAADVRAGMECGIGVKSYNDVKVGDKIEVFEKVQVARS 840          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GLUOX (Translation initiation factor IF-2 OS=Gluconobacter oxydans GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 79/194 (40.72%), Postives = 126/194 (64.95%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            +++ +++K DVQGS EA+   +Q L  + V ++ L  + G I+ SD+ LA AS AII+ FNV+A    +  A  +GV+IR Y +IY + DD+   ++G +     +  +G AEVR +F+ + +G+VAGC V+EG + +GCG+R++RD   +H G L  L+R K++VKEV  G ECG+  A Y+D  EGD++E +
Sbjct:  717 KEVALLIKADVQGSAEAISTTVQKLAHEEVAVRVLNASVGQITESDIQLAKASDAIIVAFNVRATTQARELAQREGVDIRYYSIIYQVADDVEQLVKGKVAPKHREKFLGYAEVRQVFNITKTGKVAGCYVTEGLVKRGCGVRLLRDNVVIHEGELSQLKRFKDDVKEVARGYECGLSFAGYNDLREGDMVECY 910          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_DEHE1 (Translation initiation factor IF-2 OS=Dehalococcoides ethenogenes (strain 195) GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 81/196 (41.33%), Postives = 132/196 (67.35%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSG-RVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFN 591
            +++LN+I+K DVQGS+E ++ +L+ L  D + +       G+I+ SDV LA+AS  +I+GF+     + +  AD + ++IR Y +IY L++D+  A++GLLE   ++V  G AEVRA+F S     +AGCMV EGK++K   +R++R G+ +     +SLRR K++VKEV AG ECGVG  D++D+++ DI+E ++
Sbjct:  393 IKELNIILKTDVQGSLEPIKDSLEKLSTDKIKININRSGVGNITESDVMLAMASGGLIIGFSTGIETNAQRLADAEDIDIRHYDIIYKLVEDVEKAVQGLLEPTIKEVIDGRAEVRAVFESTKKLSIAGCMVLEGKVLKNSQVRLLRGGEVIVDAPSNSLRRFKDDVKEVVAGYECGVGLKDFNDFQKSDILEFYH 588          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_PSYCK1.750e-3944.33Translation initiation factor IF-2 OS=Psychrobacte... [more]
IF2_PSYA21.750e-3944.33Translation initiation factor IF-2 OS=Psychrobacte... [more]
IF2_NITWN1.750e-3943.65Translation initiation factor IF-2 OS=Nitrobacter ... [more]
IF2_NITOC1.750e-3941.79Translation initiation factor IF-2 OS=Nitrosococcu... [more]
IF2_HELHP1.750e-3940.39Translation initiation factor IF-2 OS=Helicobacter... [more]
IF2_STRM52.285e-3943.50Translation initiation factor IF-2 OS=Stenotrophom... [more]
IF2_RHOPB2.285e-3944.16Translation initiation factor IF-2 OS=Rhodopseudom... [more]
IF2_PSESM2.285e-3940.59Translation initiation factor IF-2 OS=Pseudomonas ... [more]
IF2_GLUOX2.285e-3940.72Translation initiation factor IF-2 OS=Gluconobacte... [more]
IF2_DEHE12.285e-3941.33Translation initiation factor IF-2 OS=Dehalococcoi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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