EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CHLL2 (Translation initiation factor IF-2 OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 79/202 (39.11%), Postives = 132/202 (65.35%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++L++I+K D  GSI+A+   L  +  + V ++ + Q  G I+ +DV LA AS AII+GF V+   + K  A+ + +++R Y VIY +++D+  A+EG+L     +  +GS EVR +F     G V GC + EGK+ +   +R++R+G  ++ G LD+LRR K++VKEV+AG ECG+   +YDD + GDI+EA+  +++KR
Sbjct:  749 MKELSMIIKADTDGSIQALADGLMKIQNEEVKVQIIHQGVGQITETDVLLAAASDAIIIGFRVRPNVNAKKLAEKEDLDVRFYSVIYHVLEDVEKALEGMLSPELHEESLGSLEVRQVFRVPKVGNVGGCYMLEGKVFRDSKVRLLREGVQIYDGQLDALRRFKDDVKEVDAGYECGISLKNYDDIKVGDIVEAYRIVEKKR 950          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BAUCH (Translation initiation factor IF-2 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=infB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.285e-39
Identity = 88/198 (44.44%), Postives = 123/198 (62.12%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSI 597
            + +LN+I+K DVQGS+EA+  AL+ L  +   +K +    G I+ +D  LA AS AI++GFNV+A  S +   D + + I  Y VIY LI+++  AM G+L    +Q  IG AEVR +FS    G +AGCMV EG + +   IRVIR+   ++ G L SLRR K++V EV  G+ECG+G  +Y D   GDIIE F  I
Sbjct:  676 ILELNIILKTDVQGSVEAINDALEQLSTEKAKVKIIGSGVGGITETDATLAAASNAILIGFNVRADASARRIIDKENLNIHYYSVIYHLINEVTQAMNGMLTPEYKQDIIGLAEVRNVFSVPKFGLIAGCMVIEGIVKRHNNIRVIRNNIIIYEGELYSLRRFKDDVNEVRNGMECGIGVKNYTDIRTGDIIEVFKLI 873          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STRMK (Translation initiation factor IF-2 OS=Stenotrophomonas maltophilia (strain K279a) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 87/200 (43.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS++A+ QAL  L  +++ +  +    G I+ SD + A ASKA ++GFNV+A  S +   ++ GV++R + +IYD+ID ++    GLL     +  IG AEVR +F SS  G VAG MV EG + +   IRV+RD   +  G L+SLRR KENV+EV  G ECG+    Y+D + GD IE F  I+  RT
Sbjct:  681 LNLVIKADVQGSVQALSQALVALSNEDIRINVIHSGVGGITESDANSAAASKATVIGFNVRADASARRIIESNGVDLRYFSIIYDVIDQVKQVASGLLGVEIREEIIGIAEVRDVFRSSKLGAVAGSMVIEGVVRRNKPIRVLRDSVVIFEGELESLRRFKENVEEVRNGTECGIAVKAYNDVKPGDQIECFERIEVPRT 880          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RHOP5 (Translation initiation factor IF-2 OS=Rhodopseudomonas palustris (strain BisA53) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 86/201 (42.79%), Postives = 125/201 (62.19%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            ++  +I+K DVQGS+EA+  +L+ L  + V  + L    G IS SDV LA    A+ILGF+V+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+A +  IF+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV +G ECG+   +Y D   GD+IE +   +IQR
Sbjct:  691 KEFPLIIKADVQGSLEAILGSLEKLGTEEVAARILHAGVGGISESDVTLAEGFNAVILGFSVRANKEAAAAAKRNGIEIRYYNIIYDLVDDIKKAMSGLLAPTLRETMLGNALILEIFNISKVGKVAGCRVTDGTVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFENYTDMRAGDVIECYRVETIQR 891          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_NITSB (Translation initiation factor IF-2 OS=Nitratiruptor sp. (strain SB155-2) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 86/205 (41.95%), Postives = 133/205 (64.88%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASK-AIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++L VI+K D QGS+EA++ +L+ L  + V +  +    G IS SDV LA AS+ A+ILGFNV+  G+VK  A   GV I+ Y +IYDLIDD++  + G+L  + ++  IG AEVR  F+    G VAGC+V++G + +    RVIRDG  ++   + SL+R KE+V+EV  G ECG+   +++D + GD+IEA+  ++   T
Sbjct:  638 QLKKLPVIIKADTQGSLEAIKGSLEKLKNEEVKVDIIHAGVGAISESDVTLADASENAVILGFNVRPTGAVKEKAKQLGVNIKTYSIIYDLIDDVKALLSGMLSPIIKEEVIGQAEVRETFNVPKIGTVAGCLVTDGVIERNAKARVIRDGVVIYDSKISSLKRFKEDVREVTKGYECGLMIENFNDIKVGDVIEAYKEVEEAAT 842          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CAMC5 (Translation initiation factor IF-2 OS=Campylobacter curvus (strain 525.92) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 85/202 (42.08%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASK-AIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRK 606
            ++ L VI+K DV GS+EA++ +L+ L  + + +  +    G I+ SDV LA ASK  +ILGFN++  G +K  A   GVEI+ Y VIY+LIDD++  + GL+  +  +  +G A+VR + +    G +AGC+V+EG + +G  IR+IRDG  V+ G++ SL+R K++VKEV  G ECGVG    +D  E D IE+F  I+ +
Sbjct:  699 LKTLPVIVKADVGGSLEALKASLEKLANNEIKVDIIHSGVGGITQSDVALASASKDCVILGFNIRPTGEIKEKAKESGVEIKTYNVIYNLIDDVKALLGGLMSPIIREEQLGQAQVRQVINVPKIGAIAGCLVTEGTINRGAKIRLIRDGVVVYEGMVSSLKRFKDDVKEVAKGYECGVGIEGCNDIRENDYIESFKEIEEQ 900          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BRAJA (Translation initiation factor IF-2 OS=Bradyrhizobium japonicum GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 86/201 (42.79%), Postives = 124/201 (61.69%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQR 603
            ++  +I+K DVQGS+EA+  +L+ L  D V  + L    G IS SDV LA    A I+GF+V+A       A   G+EIR Y +IYDL+DD++ AM GLL     +  +G+A +  IF+ S  G+VAGC V++G + +G  +R+IRD   VH G L +L+R K+ VKEV +G ECG+   +Y D   GD+IE +   +IQR
Sbjct:  700 KEFPLIIKADVQGSLEAILGSLEKLGTDEVAARILHAGVGGISESDVTLAEGFNAAIIGFSVRANKEAAAAAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNAAILEIFNISKVGKVAGCRVTDGTVERGANVRLIRDNVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFENYHDMRAGDVIECYRVETIQR 900          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BORBU (Translation initiation factor IF-2 OS=Borrelia burgdorferi GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 86/203 (42.36%), Postives = 132/203 (65.02%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++L +I+K DVQGS+EA++ +L+ L  D V ++ +  + G I+ +D+  A AS AI++GF+V+     +  AD + VEIR Y VIYD I+D+R+ +EG+LE   EQ  IG AEVRA+ +    G +AGC VS G + +     V+RDG  +H G + SL+R K++VKEV    ECG+   +Y + +EGDIIEAF   + K++
Sbjct:  677 LKELKIILKADVQGSVEALKNSLEKLTNDEVRVRVVHSSAGVITETDISFASASDAIVIGFHVRPTAKAQVLADQEKVEIRKYNVIYDAINDVRSVLEGMLEPDVEQQFIGFAEVRAVINVPKIGVIAGCYVSRGLIKRDAITNVMRDGLQIHSGKISSLKRFKDDVKEVAEQYECGIMIDNYANIKEGDIIEAFEVKKVKKS 879          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BACFR (Translation initiation factor IF-2 OS=Bacteroides fragilis GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 85/202 (42.08%), Postives = 132/202 (65.35%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++LNVI+K DV GSIEA+  +L  L  + + +  + +A G IS SDV LA AS AII+GF V+   S + +A+ +GV+IRLY VIY  I++++ AMEG+L    ++V   + EVR +F  +  G VAG +V EGK+ +    R+IRDG  +  G +++L+R K++VKEV    ECG+   +Y+D + GD+IE +  ++ K+T
Sbjct:  813 QELNVIVKGDVDGSIEALSDSLIKLSTEQIQVNVIHKAVGQISESDVTLAAASDAIIIGFQVRPSASARKFAEQEGVDIRLYSVIYAAIEEVKAAMEGMLAPEVKEVVTATIEVREVFHITKVGTVAGAVVKEGKVKRSDKARLIRDGIVIFSGSINALKRFKDDVKEVGTNFECGISLVNYNDLKVGDMIETYEEVEVKQT 1014          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BACFN (Translation initiation factor IF-2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 85/202 (42.08%), Postives = 132/202 (65.35%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++LNVI+K DV GSIEA+  +L  L  + + +  + +A G IS SDV LA AS AII+GF V+   S + +A+ +GV+IRLY VIY  I++++ AMEG+L    ++V   + EVR +F  +  G VAG +V EGK+ +    R+IRDG  +  G +++L+R K++VKEV    ECG+   +Y+D + GD+IE +  ++ K+T
Sbjct:  813 QELNVIVKGDVDGSIEALSDSLIKLSTEQIQVNVIHKAVGQISESDVTLAAASDAIIIGFQVRPSASARKFAEQEGVDIRLYSVIYAAIEEVKAAMEGMLAPEVKEVVTATIEVREVFHITKVGTVAGAVVKEGKVKRSDKARLIRDGIVIFSGSINALKRFKDDVKEVGTNFECGISLVNYNDLKVGDMIETYEEVEVKQT 1014          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_CHLL22.285e-3939.11Translation initiation factor IF-2 OS=Chlorobium l... [more]
IF2_BAUCH2.285e-3944.44Translation initiation factor IF-2 OS=Baumannia ci... [more]
IF2_STRMK2.985e-3943.50Translation initiation factor IF-2 OS=Stenotrophom... [more]
IF2_RHOP52.985e-3942.79Translation initiation factor IF-2 OS=Rhodopseudom... [more]
IF2_NITSB2.985e-3941.95Translation initiation factor IF-2 OS=Nitratirupto... [more]
IF2_CAMC52.985e-3942.08Translation initiation factor IF-2 OS=Campylobacte... [more]
IF2_BRAJA2.985e-3942.79Translation initiation factor IF-2 OS=Bradyrhizobi... [more]
IF2_BORBU2.985e-3942.36Translation initiation factor IF-2 OS=Borrelia bur... [more]
IF2_BACFR2.985e-3942.08Translation initiation factor IF-2 OS=Bacteroides ... [more]
IF2_BACFN2.985e-3942.08Translation initiation factor IF-2 OS=Bacteroides ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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