EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_AZOSE (Translation initiation factor IF-2 OS=Azoarcus sp. (strain EbN1) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 88/203 (43.35%), Postives = 127/203 (62.56%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ QAL  L  D V +  +  A G IS SDV+LA AS A+I+GFN +A    +  A+  GV+IR Y +IYD +D+++ A+ G+L     +  IG  EVR +F     G VAGC V EG + +G  +RV+R+   +H G L+SL+R K++VKEV  G ECG+   +++D +EGD +E F   +  RT
Sbjct:  742 VKTLPLIIKADVQGSQEALVQALNKLSTDEVRVNAIHSAVGAISESDVNLAQASGAVIIGFNTRADAGARKLAETFGVDIRYYNIIYDAVDEVKAALSGMLAPERRENVIGLVEVRQVFKVPKVGTVAGCYVLEGVVKRGSQVRVLRNHVVIHNGELESLKRFKDDVKEVKFGFECGLSIRNFNDVQEGDQLEVFEIQEIART 944          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_AZOSB (Translation initiation factor IF-2 OS=Azoarcus sp. (strain BH72) GN=infB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.985e-39
Identity = 87/203 (42.86%), Postives = 130/203 (64.04%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+ Q+L  L  D V +  +  A G IS SDV+LA AS A+I+GFN +A    +  A++ GV+IR Y +IYD +D++++A+ G+L   + +  IG  E+R +F+ S  G VAGC V EG + +G  +R+IR+   V  G L+SL+R K++VKEV  G ECG+   +Y+D + GD +E F   +  RT
Sbjct:  737 VKSLPLIIKADVQGSQEALAQSLAKLSNDEVRVNVIHGAVGAISESDVNLAQASGAVIIGFNTRADAGARKLAESFGVDIRYYNIIYDAVDEVKSALSGMLAPEKREEVIGMVEIRQVFTISKVGSVAGCYVLEGLVKRGSSVRLIRNHTVVWTGELESLKRFKDDVKEVKFGYECGLQLKNYNDIQVGDQLEVFEIKEVART 939          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RALPJ (Translation initiation factor IF-2 OS=Ralstonia pickettii (strain 12J) GN=infB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.898e-39
Identity = 84/203 (41.38%), Postives = 128/203 (63.05%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V+ L +I+K DVQGS EA+  +L+ L  D V ++ +  A G I+ SDV+LA ASKA+I+GFN +A    +  A+N G++IR Y +IYD +D+++ AM G+L   + +   G  EVR +F     G VAGCMV +G + +   +RV+R    +  G LDSL+R K++VKEV  G ECG+   +++D +EGD +E +   +  RT
Sbjct:  761 VKSLPLIIKADVQGSQEALVHSLKKLSTDEVRVQIVHAAVGGITESDVNLATASKAVIIGFNTRADAGARKLAENHGIDIRYYNIIYDAVDEVKAAMSGMLSPEKREETTGLVEVRQVFHVPKVGAVAGCMVLDGFVKRNSLVRVLRANVVIFSGELDSLKRFKDDVKEVKQGFECGLSIKNFNDVQEGDQLEVYEITEVART 963          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_DICNV (Translation initiation factor IF-2 OS=Dichelobacter nodosus (strain VCS1703A) GN=infB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.898e-39
Identity = 85/202 (42.08%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            + ++++++K DVQGS+EA+  +L+ L  D V +  +    G I+ SDV LA+AS A I+ FNV+A  + K   + +G ++R Y +IY  IDD++ AM+GLL     +  IG AEVR +F SS  G VAGC+V +G L +   IRV+R+   ++ G L+SLRR K++V EV AG ECG+G  +Y+D   GD IE +  ++ +R
Sbjct:  676 ISKVSLMIKADVQGSVEALADSLRELSTDEVAVNIIATGIGGITESDVQLALASSATIIAFNVRAEANAKKLIEEEGGDLRYYSIIYQAIDDVKAAMQGLLSPEIREEIIGLAEVRDVFRSSKFGAVAGCIVEDGLLKRHNPIRVLRNNVVIYEGELESLRRFKDDVNEVRAGTECGLGVKNYNDVRVGDQIECYERVEIER 877          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_ACIC1 (Translation initiation factor IF-2 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=infB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.898e-39
Identity = 88/205 (42.93%), Postives = 133/205 (64.88%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQAL-QVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGV-LDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +L +I+K DV GS+EA+  AL ++   D   ++ + +  G I+ ++V LAVAS AII+GFNV+  G  +  A+ +GV++R Y VIY  I+D+  A++GLL+ V E+V +G+AEVR +F SS  G +AGC+V  G + +G   RV+RDG  V   V + SLRR K++V EV  G ECGVG   ++D   GD+IE +   ++ R+
Sbjct:  675 VAELRLILKGDVSGSVEALEDALLKIDVGDEARIRVIDRGVGAITENNVMLAVASDAIIIGFNVRPEGKARELAEREGVDVRYYSVIYQAIEDVEAALKGLLKPVYEEVQLGTAEVREVFRSSKFGNIAGCLVRSGTITRGAKARVVRDGVVVANDVSIASLRRFKDDVTEVREGFECGVGLGSFNDIRVGDVIETYEMREKPRS 879          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RHOBA (Translation initiation factor IF-2 OS=Rhodopirellula baltica GN=infB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.091e-39
Identity = 84/193 (43.52%), Postives = 127/193 (65.80%), Query Frame = 1
Query:   13 QLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            +LN+I++ D +GS+EA+ + L       V ++ L ++ G IS +D  LA AS A+ILGFNV      ++ A+ +GVEIR Y VIY L DD+R  +EG L+  E  V +G A V+ +FS S  G +AGC V++G + + C IRV RDG+T+    LD+LRR+KE+VKEV  G+ECG+    ++D ++ D++EA+
Sbjct:  836 KLNLIIRADARGSLEAIDKELSKFDHPEVEIRVLQRSVGGISLADATLASASDAVILGFNVIPDDKARSLAEERGVEIRRYDVIYKLTDDIRALIEGRLKPEERVVELGRALVKQVFSISRVGTIAGCYVAQGSIQRNCRIRVNRDGRTIGDYQLDTLRRIKEDVKEVPRGMECGIRLQGFNDIKQDDVLEAY 1028          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PELPB (Translation initiation factor IF-2 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=infB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.091e-39
Identity = 79/202 (39.11%), Postives = 131/202 (64.85%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +++L+VI+K D  GSI+A+   L  +  + V ++ + Q  G I+ +DV LA AS AII+GF V+   + K  A+ + +++R Y VIY +++D+  A+EG+L     +  +GS E+R IF     G V GC + EGK+ +   +R++RDG  ++ G L +L+R K++VKEV+AG ECG+   +YDD + GDI+EA+  +++KR
Sbjct:  783 MKELSVIIKADTDGSIQALADGLMKIQNEEVKVQIIHQGVGQITETDVLLAAASDAIIIGFRVRPNVNAKKLAEKEDLDVRFYSVIYHVLEDVEKALEGMLSPELHEESLGSLEIRQIFKVPKIGNVGGCYMLEGKMFRDSKVRLLRDGVQIYEGQLAALKRFKDDVKEVDAGYECGMSLKNYDDIKVGDIVEAYKIVEKKR 984          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CELJU (Translation initiation factor IF-2 OS=Cellvibrio japonicus (strain Ueda107) GN=infB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.091e-39
Identity = 83/194 (42.78%), Postives = 128/194 (65.98%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            + L V++K DV+GS+EA++ +L  +  D V +  +    G I+ +DV+LAV S AII+GFNV+A G+ +  A+ +GV+IR Y +IY L+D+++ A+ G+L+    +  +G A VR +F+S   G+VAGCMV EG + +   IRV+RD   +  G L+SLRR K++V EV  G ECG+G  +Y D + GD IE +
Sbjct:  729 KTLTVVIKADVRGSLEAIQASLADIGNDEVQVNVISSGIGGITENDVNLAVTSGAIIVGFNVRADGATRRLAETEGVDIRYYSIIYQLLDEVKAALSGMLDPERVETIVGIANVREVFNSPKFGQVAGCMVVEGTVYRNKPIRVLRDNVVIFTGELESLRRFKDDVNEVRNGFECGIGVKNY-DVKVGDQIEVY 921          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_BORGA (Translation initiation factor IF-2 OS=Borrelia garinii GN=infB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.091e-39
Identity = 86/203 (42.36%), Postives = 131/203 (64.53%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +++L +I+K DVQGS+EA++ +L+ L  D V ++ +  + G I+ +D+  A AS AI++GF+V+     +  AD + VEIR Y VIYD I D+++ +EG+LE   EQ  IG AEVRA+ +    G +AGC VS G + +     V+RDG  +H G + SL+R K++VKEV    ECG+   +Y + +EGDIIEAF   + K+T
Sbjct:  678 LKELKIILKADVQGSVEALKNSLEKLTNDEVRVRVVHSSAGVITETDISFASASDAIVIGFHVRPTSKAQILADQEKVEIRKYNVIYDAISDVKSVLEGMLEPDVEQQFIGFAEVRAVINVPKVGVIAGCYVSRGIIKRDAITNVMRDGLQIHSGKISSLKRFKDDVKEVAEQYECGIMIDNYANIKEGDIIEAFEVKKIKKT 880          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_MAGSA (Translation initiation factor IF-2 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=infB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.649e-39
Identity = 78/194 (40.21%), Postives = 125/194 (64.43%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            ++L V++K DVQGSIEA+   L+ +  +NV ++ L  A G I+ SD+ LA AS  +++GFNV+A    +  A   GV+IR Y +IYD+ DD++  + G+L     +  +G A +R +F+ +  G+VAGCM++EG + +G  +R++RD   +H G L  L+R K++VK+V  G ECG+   +Y+D   GD+IE F
Sbjct:  670 QELPVVIKGDVQGSIEAISSTLEKMGNENVKVRILHAAVGAINESDITLAKASNGLLIGFNVRANPQARDMARRDGVDIRYYSIIYDVTDDLKKMLSGMLAPELREKFLGYASIREVFNITKVGKVAGCMITEGTVKRGAKVRLLRDNVVIHTGDLGQLKRFKDDVKDVREGYECGMSFTNYEDIRVGDVIECF 863          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_AZOSE2.985e-3943.35Translation initiation factor IF-2 OS=Azoarcus sp.... [more]
IF2_AZOSB2.985e-3942.86Translation initiation factor IF-2 OS=Azoarcus sp.... [more]
IF2_RALPJ3.898e-3941.38Translation initiation factor IF-2 OS=Ralstonia pi... [more]
IF2_DICNV3.898e-3942.08Translation initiation factor IF-2 OS=Dichelobacte... [more]
IF2_ACIC13.898e-3942.93Translation initiation factor IF-2 OS=Acidothermus... [more]
IF2_RHOBA5.091e-3943.52Translation initiation factor IF-2 OS=Rhodopirellu... [more]
IF2_PELPB5.091e-3939.11Translation initiation factor IF-2 OS=Pelodictyon ... [more]
IF2_CELJU5.091e-3942.78Translation initiation factor IF-2 OS=Cellvibrio j... [more]
IF2_BORGA5.091e-3942.36Translation initiation factor IF-2 OS=Borrelia gar... [more]
IF2_MAGSA6.649e-3940.21Translation initiation factor IF-2 OS=Magnetospiri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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