EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_EDWI9 (Translation initiation factor IF-2 OS=Edwardsiella ictaluri (strain 93-146) GN=infB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.134e-45
Identity = 92/203 (45.32%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS+EA+  +L+ L  D V +K +    G I+ +D  LA AS AI+LGFNV+A  S +   + + +++R Y VIYDLID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+R+   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F +I+ KRT
Sbjct:  697 VSELNIVLKADVQGSVEAIADSLRKLSTDEVKVKIVGSGVGGITETDATLAAASNAILLGFNVRADASARRVVEAENLDLRYYSVIYDLIDEVKQAMSGMLAPEYKQEIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHSPIRVLRENVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRPGDVIEVFETIEVKRT 899          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_GEOMG (Translation initiation factor IF-2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=infB PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.640e-45
Identity = 91/195 (46.67%), Postives = 131/195 (67.18%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            V+ LN I+K DVQGS+EAV  +L+ L  D V L  +  + G I+ +DV+LA AS AIILGFNV+        A+ +GV++RLY +IYD ++D++ AMEGLLE    +  +G AE+R +FS    G V GC + +GK+++   +R++RD   V+ G + SLRR K++VKEV  G ECG+G  +Y+D + GDIIEAF
Sbjct:  681 VKDLNAIVKADVQGSVEAVSDSLRKLSTDAVRLNVIHSSVGAITETDVNLASASNAIILGFNVRPEPKASAMAEKEGVDVRLYNIIYDAVEDIKKAMEGLLEPTLREKYLGRAEIREVFSVPKVGNVGGCYIQDGKVLRNASVRLLRDNVVVYEGKMSSLRRFKDDVKEVATGYECGIGLENYNDIKVGDIIEAF 875          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLONN (Translation initiation factor IF-2 OS=Clostridium novyi (strain NT) GN=infB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.754e-45
Identity = 92/196 (46.94%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            +V++L+VI+K DVQGS+EAV Q+L+ L  D+V ++ +  A G IS +DV LA AS A+I+GFNV+   +    A+ +GV +R YRVIYD +DD++ AM G+LE   ++V +GSAEVR ++  S  G +AGC V  GK+ +   +RVIRDG  +    + SL+R K++ KEV  G ECG+    ++D +EGDIIEAF
Sbjct:  478 KVKELDVIVKADVQGSVEAVIQSLEKLSTDSVKVRVIHGAVGAISETDVTLAAASNAVIIGFNVRPSNNATVLAEKEGVNVRTYRVIYDALDDIKAAMVGMLEPEYKEVVLGSAEVRVVYKISSVGTIAGCYVLNGKITRDSSVRVIRDGIVIFESEISSLKRFKDDAKEVAKGYECGLSVEKFNDIKEGDIIEAF 673          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_PROMH (Translation initiation factor IF-2 OS=Proteus mirabilis (strain HI4320) GN=infB PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.209e-45
Identity = 94/204 (46.08%), Postives = 134/204 (65.69%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            +V +LN+++K DVQG+ EA+  AL  L  D V LK +    G I+ +D  LA AS AIILGFNV+A  S +   + + V++R Y VIY LID++++AM G+LE   +Q  +G AEVR +F S   G +AGCMV EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KR+
Sbjct:  711 KVSELNIVLKTDVQGTCEAITDALVKLSTDEVKLKIIGSGVGGITETDATLAAASDAIILGFNVRADASARRIIEQESVDLRYYSVIYSLIDEIKSAMSGMLEPEYKQEIMGLAEVRDVFKSPKFGAIAGCMVVEGNIKRNNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFQVIEIKRS 914          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRAP2 (Translation initiation factor IF-2 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=infB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.109e-45
Identity = 94/196 (47.96%), Postives = 132/196 (67.35%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+I+GFNV+A  + K  A+  GVE+R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+RD   ++ G L+SL+R K++  EV  G+ECG+G  +Y+D  EGD IE F  I+
Sbjct:  644 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVIIGFNVRADSAAKKLAEVDGVELRYYNIIYDLIDDVKKAMTGLLSPDMKEQIIGIAEVREVYRSSKFGSIAGCMVVEGAVKRTNPIRVLRDNVVIYEGTLESLKRFKDDASEVKKGMECGIGVKNYNDVREGDQIEVFEVIE 839          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_COXBN (Translation initiation factor IF-2 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=infB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.109e-45
Identity = 91/200 (45.50%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS+EA+ +AL  L  D V +  +    G I+ SDV+LA+AS A+++GFNV+A    +   + +GV++R Y +IYDLID+++ A+ GLL    E+  +G AEVR +F SS  G +AGCMV EG + +   IRV+RD   ++ G+L+SLRR KE+V EV  G ECG+G  +Y+D + GD IE +   Q  RT
Sbjct:  602 LNIVLKADVQGSLEALTEALNKLSTDEVKVNIIASGVGGITESDVNLAIASDAVVIGFNVRADAPTRVLVEREGVDLRYYSIIYDLIDEVKKALSGLLAPEFEEKIVGLAEVRDVFRSSKIGAIAGCMVVEGVVRRHLPIRVLRDNVVIYEGLLESLRRYKEDVAEVRQGTECGIGVKNYNDVKVGDQIEVYEKTQVHRT 801          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOK5 (Translation initiation factor IF-2 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=infB PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 8.109e-45
Identity = 90/203 (44.33%), Postives = 141/203 (69.46%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            +V++LN+I+K DVQGSIEA++Q+LQ L  + V ++ +  A G I+ +DV LA AS AII+GFNV+   + +  A+ + V+++ YRVIY+ I+D++ AM G+LE   ++V +G AE+R I+  S  G +AGC V EGK+V+ C +R+IRDG  +    L SL+R K++VKE   G ECG+    ++D +EGDI+EA++  + K+
Sbjct:  489 KVKELNIIVKADVQGSIEALKQSLQKLSNEEVKVRVIHGAVGAITETDVTLASASNAIIIGFNVRPDSNAQAAAEKESVDVKTYRVIYNAIEDIKAAMVGMLEPDYKEVILGKAEIRQIYKISNIGTIAGCYVQEGKMVRNCKVRIIRDGIVIFESELASLKRFKDDVKEAAEGYECGLSIEKFNDIKEGDIVEAYDIEEIKK 691          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPY (Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPS (Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPP (Translation initiation factor IF-2 OS=Yersinia pestis (strain Pestoides F) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_EDWI92.134e-4545.32Translation initiation factor IF-2 OS=Edwardsiella... [more]
IF2_GEOMG3.640e-4546.67Translation initiation factor IF-2 OS=Geobacter me... [more]
IF2_CLONN4.754e-4546.94Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_PROMH6.209e-4546.08Translation initiation factor IF-2 OS=Proteus mira... [more]
IF2_FRAP28.109e-4547.96Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_COXBN8.109e-4545.50Translation initiation factor IF-2 OS=Coxiella bur... [more]
IF2_CLOK58.109e-4544.33Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_YERPY1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pse... [more]
IF2_YERPS1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pse... [more]
IF2_YERPP1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pes... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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