EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPN (Translation initiation factor IF-2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPG (Translation initiation factor IF-2 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  680 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 882
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPE (Translation initiation factor IF-2 OS=Yersinia pestis GN=infB PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPB (Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERPA (Translation initiation factor IF-2 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  680 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 882
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERP3 (Translation initiation factor IF-2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_YERE8 (Translation initiation factor IF-2 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/203 (45.81%), Postives = 134/203 (66.01%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  +L+ L  D V ++ +    G I+ +D  LA AS AIILGFNV+A  S +   + +G+++R Y VIY LID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+RD   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F  I+ KRT
Sbjct:  688 VSELNIVIKSDVQGSCEAICDSLEKLSTDEVKVRIVGSGVGGITETDATLAAASGAIILGFNVRADASARRVVETEGLDLRYYSVIYSLIDEVKQAMSGMLAPEYKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVIKRNNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVFEIIEIKRT 890
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATT (Translation initiation factor IF-2 OS=Francisella tularensis subsp. tularensis GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATO (Translation initiation factor IF-2 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATN (Translation initiation factor IF-2 OS=Francisella tularensis subsp. novicida (strain U112) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_YERPN1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pes... [more]
IF2_YERPG1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pes... [more]
IF2_YERPE1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pes... [more]
IF2_YERPB1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pse... [more]
IF2_YERPA1.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pes... [more]
IF2_YERP31.383e-4445.81Translation initiation factor IF-2 OS=Yersinia pse... [more]
IF2_YERE81.383e-4445.81Translation initiation factor IF-2 OS=Yersinia ent... [more]
IF2_FRATT1.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_FRATO1.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_FRATN1.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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