EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATM (Translation initiation factor IF-2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATH (Translation initiation factor IF-2 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRATF (Translation initiation factor IF-2 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_FRAT1 (Translation initiation factor IF-2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=infB PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.383e-44
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQ 600
            L +I+K DVQGS+EA+R++L  L  D V +  +    G I++SDV LAVAS A+++GFNV+A  + K  A+  GVE R Y +IYDLIDD++ AM GLL    ++  IG AEVR ++ SS  G +AGCMV EG + +   IRV+R+   ++ G L+SL+R K++  EV  GLECG+G  +Y+D  EGD IE F  I+
Sbjct:  646 LKIILKGDVQGSVEAIRESLLKLSTDEVKVDIIASGIGAITSSDVTLAVASTAVVIGFNVRADSAAKKLAETDGVEFRYYNIIYDLIDDVKKAMSGLLSPEMKEQIIGIAEVREVYRSSKFGSIAGCMVIEGVVKRTNPIRVLRNNVVIYEGTLESLKRFKDDASEVKKGLECGIGVKNYNDVREGDQIEVFEVIE 841
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAW (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain MW2) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAT (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAS (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain MSSA476) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAR (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain MRSA252) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAN (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain N315) GN=infB PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAM (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=infB PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_FRATM1.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_FRATH1.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_FRATF1.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_FRAT11.383e-4447.45Translation initiation factor IF-2 OS=Francisella ... [more]
IF2_STAAW1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAT1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAS1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAR1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAN1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAM1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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