EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAE (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain Newman) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAC (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain COL) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAAB (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAA9 (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain JH9) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAA8 (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain NCTC 8325) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAA3 (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain USA300) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAA2 (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain JH1) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_STAA1 (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/202 (45.54%), Postives = 138/202 (68.32%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++ LNVI+K DVQGS+EA+  +L  +  + V ++ +  A G I+ SDV LA AS  II+GFNV+     K  A+ + V++RL+RVIY++I+++ +AM+GLL+   E+  IG AEVR  F  S  G +AGC V+EGK+ +  G+R+IRDG   + G LD+L+R K++ KEV  G ECG+   +Y+D +EGD+IEAF  ++ KR
Sbjct:  504 MKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDSGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIKR 705
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_SODGM (Translation initiation factor IF-2 OS=Sodalis glossinidius (strain morsitans) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/203 (45.32%), Postives = 135/203 (66.50%), Query Frame = 1 
Query:    7 VRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            V +LN+++K DVQGS EA+  AL+ L  D V +K +    G I+ +D  LA AS AI+LGFNV+A  S +   + + +++R Y VIYDLID+++ AM G+L    +Q  IG AEVR +F S   G +AGCMV+EG + +   IRV+R+   ++ G L+SLRR K++V EV  G+ECG+G  +Y+D   GD+IE F +I+ +RT
Sbjct:  690 VSELNIVLKSDVQGSAEAISDALEKLSNDEVKVKIVGSGVGGITETDATLAAASNAILLGFNVRADASARRVIEAENLDLRYYSVIYDLIDEVKQAMSGMLAPEYKQEIIGLAEVRNVFRSPKFGAIAGCMVTEGVVKRHNKIRVLRENVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRSGDVIEVFETIEIQRT 892
[Close]
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_COXBU (Translation initiation factor IF-2 OS=Coxiella burnetii GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 91/200 (45.50%), Postives = 132/200 (66.00%), Query Frame = 1 
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS+EA+ +AL  L  D V +  +    G I+ SDV+LA+AS A+++GFNV+A    +   + +GV++R Y +IYDLID+++ A+ GLL    E+  +G AEVR +F SS  G +AGCMV EG + +   IRV+RD   ++ G L+SLRR KE+V EV  G ECG+G  +Y+D + GD IE +   Q  RT
Sbjct:  602 LNIVLKADVQGSLEALTEALNKLSTDEVKVNIIASGVGGITESDVNLAIASDAVVIGFNVRADAPTRVLVEREGVDLRYYSIIYDLIDEVKKALSGLLAPEFEEKIVGLAEVRDVFRSSKIGAIAGCMVVEGVVRRHLPIRVLRDNVVIYEGQLESLRRYKEDVAEVRQGTECGIGVKNYNDVKVGDQIEVYEKTQVHRT 801
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_STAAE1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAC1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAB1.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAA91.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAA81.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAA31.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAA21.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAA11.806e-4445.54Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_SODGM1.806e-4445.32Translation initiation factor IF-2 OS=Sodalis glos... [more]
IF2_COXBU1.806e-4445.50Translation initiation factor IF-2 OS=Coxiella bur... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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