EY660402

Overview
NameEY660402
Unique NameEY660402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_COXBR (Translation initiation factor IF-2 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 91/200 (45.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS+EA+ +AL  L  D V +  +    G I+ SDV+LA+AS A+++GFNV+A    +   + +GV++R Y +IYDLID+++ A+ GLL    E+  +G AEVR +F SS  G +AGCMV EG + +   IRV+RD   ++ G L+SLRR KE+V EV  G ECG+G  +Y+D + GD IE +   Q  RT
Sbjct:  602 LNIVLKADVQGSLEALTEALNKLSTDEVKVNIIASGVGGITESDVNLAIASDAVVIGFNVRADAPTRVLVEREGVDLRYYSIIYDLIDEVKKALSGLLAPEFEEKIVGLAEVRDVFRSSKIGAIAGCMVVEGVVRRHLPIRVLRDNVVIYEGQLESLRRYKEDVAEVRQGTECGIGVKNYNDVKVGDQIEVYEKTQVHRT 801          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_COXB2 (Translation initiation factor IF-2 OS=Coxiella burnetii (strain CbuG_Q212) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 91/200 (45.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS+EA+ +AL  L  D V +  +    G I+ SDV+LA+AS A+++GFNV+A    +   + +GV++R Y +IYDLID+++ A+ GLL    E+  +G AEVR +F SS  G +AGCMV EG + +   IRV+RD   ++ G L+SLRR KE+V EV  G ECG+G  +Y+D + GD IE +   Q  RT
Sbjct:  602 LNIVLKADVQGSLEALTEALNKLSTDEVKVNIIASGVGGITESDVNLAIASDAVVIGFNVRADAPTRVLVEREGVDLRYYSIIYDLIDEVKKALSGLLAPEFEEKIVGLAEVRDVFRSSKIGAIAGCMVVEGVVRRHLPIRVLRDNVVIYEGQLESLRRYKEDVAEVRQGTECGIGVKNYNDVKVGDQIEVYEKTQVHRT 801          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_COXB1 (Translation initiation factor IF-2 OS=Coxiella burnetii (strain CbuK_Q154) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 91/200 (45.50%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   16 LNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            LN+++K DVQGS+EA+ +AL  L  D V +  +    G I+ SDV+LA+AS A+++GFNV+A    +   + +GV++R Y +IYDLID+++ A+ GLL    E+  +G AEVR +F SS  G +AGCMV EG + +   IRV+RD   ++ G L+SLRR KE+V EV  G ECG+G  +Y+D + GD IE +   Q  RT
Sbjct:  602 LNIVLKADVQGSLEALTEALNKLSTDEVKVNIIASGVGGITESDVNLAIASDAVVIGFNVRADAPTRVLVEREGVDLRYYSIIYDLIDEVKKALSGLLAPEFEEKIVGLAEVRDVFRSSKIGAIAGCMVVEGVVRRHLPIRVLRDNVVIYEGQLESLRRYKEDVAEVRQGTECGIGVKNYNDVKVGDQIEVYEKTQVHRT 801          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOTH (Translation initiation factor IF-2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 88/196 (44.90%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF 588
            +V++LN+I+K DVQGS+EA++Q+L+ L  D V +K +    G ++ +DV LA  S AII+GFNV+ P +V   A   GV++RLY +IY+ I+D+  AM+G+LE   ++V IG  E+R IF  SG G V G  V++GK+ +   IR++RDG  VH G L SL+R K++V+EV  G ECG+    ++D +EGD++E +
Sbjct:  833 KVKELNIIVKADVQGSVEALKQSLEKLSNDEVRVKIIHGGVGSVTETDVTLAQVSNAIIIGFNVRPPANVIDAAKKAGVDLRLYTIIYNAIEDIEAAMKGMLEPTYKEVVIGHVEIRQIFKVSGVGTVGGGYVTDGKITRNANIRLVRDGIVVHEGKLGSLKRFKDDVREVAEGYECGLSIEKFNDIKEGDVVEVY 1028          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CLOB8 (Translation initiation factor IF-2 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=infB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.806e-44
Identity = 92/204 (45.10%), Postives = 139/204 (68.14%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAF--NSIQRK 606
            +V++L +I+K DVQGS+EA++Q+L+ L  D+V ++ +    G I+ +D+ LA AS AI++GFNV+   +    AD  GV+I+ YR+IYD IDD+++AM G+LE   ++V +G+AEVR  +  S  G +AGC V +GKL +    RVIRDG  +    L SL+R K++ KEVNAG ECG+    ++D +EGDI+E F   +I+RK
Sbjct:  490 KVKELAIIVKADVQGSVEAIKQSLEKLSTDDVKVRVIHGGVGAITETDITLATASNAIVIGFNVRPDNNAAAQADRDGVDIKSYRIIYDAIDDVKSAMIGMLEPDYKEVILGTAEVRETYKISNVGTIAGCYVLKGKLQRNAETRVIRDGIVIFESALSSLKRFKDDAKEVNAGYECGLTIEKFNDIKEGDIVECFMMEAIKRK 693          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICRS (Translation initiation factor IF-2 OS=Rickettsia rickettsii (strain Sheila Smith) GN=infB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.359e-44
Identity = 91/203 (44.83%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DVQGS+EA+  +L  LP D + L+ L    G I+ SDV LA AS AII+ FNV+A  +  T A+ + V+IR Y +IY LIDD++  M G+LE +  +  IGSAE+R IF+ +  G++AG  V++G + KG G+R++RD   +H G L +L+R K+ VKEV  G ECG+   +Y+D  EGD +E F  IQ +R
Sbjct:  627 KIKELPLIIKGDVQGSVEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHASSAIIVSFNVRAGANALTAAEKEKVDIRYYSIIYHLIDDIKAIMSGMLEPIVREQYIGSAEIRQIFNITKVGKIAGSYVTKGIIKKGAGVRLLRDNVVIHEGKLKTLKRFKDEVKEVREGYECGIAFENYEDIREGDTVEVFELIQEQR 829          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICRO (Translation initiation factor IF-2 OS=Rickettsia rickettsii (strain Iowa) GN=infB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.359e-44
Identity = 91/203 (44.83%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DVQGS+EA+  +L  LP D + L+ L    G I+ SDV LA AS AII+ FNV+A  +  T A+ + V+IR Y +IY LIDD++  M G+LE +  +  IGSAE+R IF+ +  G++AG  V++G + KG G+R++RD   +H G L +L+R K+ VKEV  G ECG+   +Y+D  EGD +E F  IQ +R
Sbjct:  627 KIKELPLIIKGDVQGSVEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHASSAIIVSFNVRAGANALTAAEKEKVDIRYYSIIYHLIDDIKAIMSGMLEPIVREQYIGSAEIRQIFNITKVGKIAGSYVTKGIIKKGAGVRLLRDNVVIHEGKLKTLKRFKDEVKEVREGYECGIAFENYEDIREGDTVEVFELIQEQR 829          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_RICFE (Translation initiation factor IF-2 OS=Rickettsia felis GN=infB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.359e-44
Identity = 89/203 (43.84%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKR 609
            ++++L +I+K DVQGS+EA+  +L  LP D + L+ L    G I+ SDV LA AS AII+GFNV+A  +  T A+ + V+IR Y +IY+LIDD++  M G+L+ +  +  IGS E+R IF+ +  G++AG  V++G + KG G+R++RD   +H G L +L+R K+ VKEV  G ECG+   +Y+D  EGD +E F  +Q +R
Sbjct:  625 KIKELPLIIKGDVQGSVEAISGSLLKLPSDEIKLRILHSGVGPITESDVSLAHASSAIIVGFNVRAGANALTAAEKEKVDIRYYSIIYNLIDDVKAIMSGMLDPIVREQYIGSVEIRQIFNITKVGKIAGSYVTKGIIKKGAGVRLLRDNVVIHEGKLKTLKRFKDEVKEVREGYECGIAFENYEDIREGDTVEVFELVQEQR 827          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_OCHA4 (Translation initiation factor IF-2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=infB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.359e-44
Identity = 93/202 (46.04%), Postives = 130/202 (64.36%), Query Frame = 1
Query:   10 RQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++  +++K DVQGSIEA+  AL  L  D V  + +    G I+ SDV LA AS A I+GFNV+A    +  AD +G+EIR Y +IYDLIDD++ AM GLL     +  +G+AE+  +F+ +  G+VAGC V+EGK+ +G G+R+IRD   +H G L +L+R K+ V EV AG ECG+   +YDD   GD+IEAF      RT
Sbjct:  762 KEFPLVIKGDVQGSIEAITNALDKLGTDEVRARIVHSGAGGITESDVSLAEASNAAIIGFNVRANKQARDAADQQGIEIRYYNIIYDLIDDVKAAMSGLLSPERRETFLGNAEILEVFNITKVGKVAGCRVTEGKVERGAGVRLIRDNVVIHEGKLKTLKRFKDEVSEVPAGQECGMAFENYDDIRAGDVIEAFRVEHVSRT 963          
BLAST of EY660402 vs. ExPASy Swiss-Prot
Match: IF2_CARHZ (Translation initiation factor IF-2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=infB PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.359e-44
Identity = 87/204 (42.65%), Postives = 140/204 (68.63%), Query Frame = 1
Query:    4 RVRQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDWEEGDIIEAFNSIQRKRT 612
            ++++LN+++K DV GS+EA++Q+L  L  + V +  +    G I+ +D+ LA AS AI++GFNV+   + +  A+ + +++R+YR+IY+L+DD++ AM GLLE  +++V +G AEVR  F +S  G +AG  V EGK+ +   +RVIRDG  +H G ++SL+R K++V+EV  G ECG+    ++D  EGDIIEAF   + KRT
Sbjct:  622 KIKELNIVLKADVHGSVEAIKQSLSRLSTEEVKVNVIHSGVGAITETDIMLASASNAIVIGFNVRPDSNARKLAETEKIDVRVYRIIYELLDDIKAAMAGLLEPEQKEVVLGRAEVRKTFKASKVGTIAGLYVLEGKITRSAKVRVIRDGIVIHEGNVESLKRFKDDVREVAQGYECGLTIEKFNDIREGDIIEAFTIEEVKRT 825          
The following BLAST results are available for this feature:
BLAST of EY660402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2_COXBR1.806e-4445.50Translation initiation factor IF-2 OS=Coxiella bur... [more]
IF2_COXB21.806e-4445.50Translation initiation factor IF-2 OS=Coxiella bur... [more]
IF2_COXB11.806e-4445.50Translation initiation factor IF-2 OS=Coxiella bur... [more]
IF2_CLOTH1.806e-4444.90Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_CLOB81.806e-4445.10Translation initiation factor IF-2 OS=Clostridium ... [more]
IF2_RICRS2.359e-4444.83Translation initiation factor IF-2 OS=Rickettsia r... [more]
IF2_RICRO2.359e-4444.83Translation initiation factor IF-2 OS=Rickettsia r... [more]
IF2_RICFE2.359e-4443.84Translation initiation factor IF-2 OS=Rickettsia f... [more]
IF2_OCHA42.359e-4446.04Translation initiation factor IF-2 OS=Ochrobactrum... [more]
IF2_CARHZ2.359e-4442.65Translation initiation factor IF-2 OS=Carboxydothe... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660402 ID=EY660402; Name=EY660402; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGCCAGCTGAATGTTATTATGAAGGTTGACGTTCAGGGATC
CATTGAGGCTGTCAGACAAGCCCTGCAAGTGCTGCCACAAGATAATGTCA
CTTTGAAGTTCCTCTTGCAAGCGACAGGGGATATCAGTGCTAGTGATGTT
GATCTTGCGGTTGCTAGCAAAGCCATTATTTTGGGTTTCAATGTTAAAGC
ACCAGGATCTGTTAAGACTTATGCAGATAACAAAGGTGTTGAGATTCGAC
TATACAGAGTTATCTATGATCTCATTGATGATATGAGAAATGCAATGGAA
GGACTGCTAGAGACTGTTGAGGAACAAGTACCGATTGGCTCAGCTGAAGT
CCGGGCCATCTTCAGCAGTGGCAGTGGTCGTGTTGCTGGATGCATGGTAT
CAGAGGGAAAATTAGTGAAAGGCTGTGGCATTCGGGTCATTCGAGATGGA
AAGACAGTCCATGTTGGTGTGCTTGATTCTTTGAGACGGGTTAAAGAAAA
TGTAAAAGAGGTAAATGCTGGATTAGAGTGTGGTGTTGGAGCTGCTGACT
ATGATGATTGGGAAGAGGGAGACATTATTGAGGCCTTCAACTCCATTCAG
AGGAAACGGACCCTTGAAGAGGCCTCAGCTTCAATGGCTTCTGCATTGGA
AGGAGCCGGAATTGAATTATAGAAAGATTTGATTATAAATCAGCTTATTA
GCTCGATGAGATCTGTGCACTCATGCCAAAGCCGGCGTGCAACCATCCAA
TCAGTGCTTCAAAGTTTCTCATGAGGTACACATATTGATTAGTTTCCTCA
CATGCAATTTATTTCCAGGTGTGGGCTGAGTATCCGAGCTTGCTGTGATT
TTTGTCGATTGGTGTATGCTAATCAGGGTGTACATACAATGTATGGCATT
GGNAGCTCCTTT
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