EY660400

Overview
NameEY660400
Unique NameEY660400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.650e-74
Identity = 139/181 (76.80%), Postives = 155/181 (85.64%), Query Frame = 3
Query:  300 NGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            NGFGRIGRNFLRC   R++S LEV+AIND+GGVKQASHLLKYDSTLG F+ADVK V    ISV+GK I+VVS+R+P  LPWG++ IDLVIEGTGVF+D  GA KHI+AGAKKVLITAP KG DIPTYVVGVNA  YK  + IISNASCTTNCLAPFVKVLD+KFGI+KG MT THSYTGDQ
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYKHSDAIISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQ 181          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 7.650e-74
Identity = 148/263 (56.27%), Postives = 188/263 (71.48%), Query Frame = 3
Query:   81 MASATLSVAKSALQGNGKGFSEFSGLR---NSASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            ++S   + +KSA+      F++FSGL+   N+A L    + S      D +       + +G+ +      A   K++VAINGFGRIGRNF+RCW GR DS ++VV INDT GVK ASHLLKYDS LG F++DV   G D I+VDGK I+VVSNRNP+ LPW ++ ID+V+E TGVFVD  GAGKHIQAGAKKVLITAPGKG+ + T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ
Sbjct:    7 VSSVFSTSSKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAFGGVSDANDAFFNAVNTMGAPARTSN--APSMKVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDVV-AGEDSITVDGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQ 266          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.797e-73
Identity = 148/264 (56.06%), Postives = 187/264 (70.83%), Query Frame = 3
Query:   81 MASATLSVAKSALQGNGKG-FSEFSGLRN---SASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +A+   +   S  Q  G+  F++FSG++    S+ L   +  S      D +     + S + +++ G        K++VAINGFGRIGRNF+RCW GR DS +EVV INDT GVK ASHLLKYDS LG F+ADV   G D ISV+GK I++VSNRNP+ LPW ++ ID+V+E TGVFVD  GAGKHI+AGAKKVLITAPGKGD I T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ
Sbjct:    7 VATVRATTKSSVCQVQGRSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFG-----PTMKVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQ 264          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.496e-66
Identity = 128/186 (68.82%), Postives = 148/186 (79.57%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +VAINGFGRIGRNFLRCW GR DS LEVV INDT   +  +HLL+YDS LG  +AD+     + I+V+GK I+ VS+RNP+NLPW +  +DLVIE TGVFV  EGA KH+QAGAKKVLITAPGKG +I TYVVGVNA  YK +E  +ISNASCTTNCLAPF KV++  FGIIKG MTTTHSYTGDQ
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKLDADIS-ADENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQ 187          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.814e-60
Identity = 117/186 (62.90%), Postives = 142/186 (76.34%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            ++VAINGFGRIGRNF RCW GR+++ +E+VA+NDT   +  +HLLKYDS LG  +        + I+V+GK I+ VS+RNP NLPW +  IDL+IE TGVFV +EGA KHI AGAKKVLITAPGK +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFVSKEGATKHINAGAKKVLITAPGKNEDGTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQ 187          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.212e-60
Identity = 116/186 (62.37%), Postives = 141/186 (75.81%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            ++VAINGFGRIGRNF RCW GR++S +E+VA+NDT   +  +HLLKYDS LG  +        + I+V+GK I+ VS+RNP NLPW +  IDL+IE TGVF  +EGA KH+ AGAKKVLITAPGK +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGKNEDGTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQ 187          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.022e-54
Identity = 110/186 (59.14%), Postives = 134/186 (72.04%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR+F R   GR++  +E+VAIND    K  +HLLKYDS  GIF+  V+    D I VDGK I+V + ++P  +PWGDLG+D+VIE TGVF DRE A KH+Q GAKKV+ITAP K    T V+GVN + Y P E  IISNASCTTNCLAP VKVL++ FG+ KG M T H+YT DQ
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE-AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.445e-53
Identity = 103/186 (55.38%), Postives = 134/186 (72.04%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            ++V INGFGRIGRN+ R     + + +E+VA+ND G     +HLLKYD+ LG  +A+V     D I+VDGK I+V+S RNP ++PWG+LG+D+VIE TG+F  +  A KHI  GAKKVLI+AP K +  T V+GVN D Y P +  +ISNASCTTNC+AP  KVLD+ FGI+KG MTT H+YT DQ
Sbjct:    3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHT-EDTITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAKDEDITIVMGVNQDKYDPANHHVISNASCTTNCVAPMAKVLDENFGIVKGLMTTVHAYTNDQ 186          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 197.978 bits (502), Expect = 5.899e-50
Identity = 102/186 (54.84%), Postives = 130/186 (69.89%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGRN  R     K+  +EVVA+ND       +HLLKYDS  G  +A+V  V  + + V+GK I V + R+P NL WG++G+D+V+E TG F  RE A KH++AGAKKV+I+AP K +  T V+GVN D Y P    +ISNASCTTNCLAPF KVL ++FGI++G MTT HSYT DQ
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS-VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.927e-49
Identity = 104/184 (56.52%), Postives = 126/184 (68.48%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +VAINGFGRIGR   R  + RK+  +EVVAIND    K  +HLLKYDS    F   V+    + + VDGK I+V +  +P  LPW DLG+D VIE TGVF +RE A  H+QAGAKKV+ITAP KG+  T V+G N D  KP+  IIS ASCTTN +AP VKVL +KFGI+ G +TT HSYT DQ
Sbjct:    3 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYT-ENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQ 185          
The following BLAST results are available for this feature:
BLAST of EY660400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PA_SCEVA7.650e-7476.80Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_GRAVE7.650e-7456.27Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR3.797e-7356.06Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY34.496e-6668.82Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP4.814e-6062.90Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT8.212e-6062.37Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_AQUAE3.022e-5459.14Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_STRCO7.445e-5355.38Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BACST5.899e-5054.84Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_THEMA2.927e-4956.52Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660400 ID=EY660400; Name=EY660400; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGCTTGTCTTTGCCCAGCTTAGCTTAGCCACCACTGCTTGCT
CTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTC
TGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCT
CAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGAT
GACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTCTAGGAAGCAGCAG
CAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCA
ATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGC
AAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAA
GCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTCGGCATCTTTGAAG
CCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTC
ATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTT
GGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGG
GTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCC
CCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGC
TTACAAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACT
GCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAG
GGGAACATGACCACCACACACTCGTACACTGGCGACCAAGACTACTCGAT
GCTAGCCACGCGGACTCAN
back to top