EY660400

Overview
NameEY660400
Unique NameEY660400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660400_ssr243 microsatellite EY660400_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10901 contig Csv1_Contig10901:140..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.112e-48
Identity = 102/186 (54.84%), Postives = 129/186 (69.35%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR  LR  +  K+  +EVVA+ND     + A+++ KYDST G F+  V+     G+ +DGK IQV   R+P N+PWG  G D V+E TGVF  +E A  H++ GAKKV+I+AP  GD P +VVGVN DAYKPD  +ISNASCTTNCLAP  KV++ K+GII+G MTT HS T  Q
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVE-AKDGGLIIDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPS-GDAPMFVVGVNLDAYKPDMTVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.478e-48
Identity = 105/186 (56.45%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +K+ INGFGRIGR  LR   GRKD  +EVVA+ND       A+++ KYDST G ++ +V   G D + +DG  I+V   R+P N+PWG  G+D VIE TGVF   EGA KHI AGAKKV+ITAP   D P +VVGVN D Y PD  IISNASCTTNCLAP  KV++  FGI +G MTT HS T  Q
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKD--IEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASGDD-LVIDGHKIKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPS-ADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSITATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.237e-48
Identity = 99/187 (52.94%), Postives = 127/187 (67.91%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KVAING+GRIGRN LR  + G K   LE+VAIND G     +HL +YD+  G F  +V   G D   V+G  I+V++ RNP  LPWG+LG+D+V+E TG+F  +E A  H++ GAKKV+I+APG  D+  T V GVN    K  + +ISNASCTTNCLAP VK L +K G++ G MTT HSYT DQ
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDLEIVAINDLGNAATNAHLTQYDTVHGRFPGEVSVDG-DAFRVNGDRIRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLKGGAKKVIISAPGGKDVDATIVYGVNHGVLKATDTVISNASCTTNCLAPLVKPLHEKLGVVNGLMTTVHSYTNDQ 188          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.211e-48
Identity = 98/187 (52.41%), Postives = 127/187 (67.91%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KVAING+GRIGRN LR  + G K   +E+VAIND G     +HL +YD+  G F  +V   G D   V+G  I+V++ RNP  LPWG+LG+D+V+E TG+F  +E A  H++ GAKKV+I+APG  D+  T V GVN    K  + +ISNASCTTNCLAP VK L +K G++ G MTT HSYT DQ
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDIEIVAINDLGNAATNAHLTQYDTVHGRFPGEVSVDG-DAFRVNGDRIRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLRGGAKKVIISAPGGKDVDATIVYGVNHGVLKATDTVISNASCTTNCLAPLVKPLHEKLGLVNGLMTTVHSYTNDQ 188          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.104e-47
Identity = 104/186 (55.91%), Postives = 130/186 (69.89%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR  LR    +++S +EV+AIND       ++L K+DST G F  DV+    D + V  + IQ +S RN  NLPW DLG+DLVIE TG+F  +E A KHIQAGAK+VLI+APGKGDIPT+V+GVN   + P++  +ISNASCTTNCLAP  KVL   FGI +G MTT H+ T  Q
Sbjct:    1 MKVVINGFGRIGRLVLRQIL-KRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVR-CEADHLIVGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISAPGKGDIPTFVMGVNHKTFNPEKDFVISNASCTTNCLAPIAKVLLDNFGITEGLMTTVHAATATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.776e-46
Identity = 102/186 (54.84%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            + V INGFGRIGR  LR    RKD  +++VAIND     + AS++ KYDST G +  +V   G + I +DGK I+V   R+PVN+PWG  G+D VI+ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN D Y PD  IISNASCTTNCLAP  K+++ KFGI +G MTT HS T  Q
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKD--IQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSHEG-ENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSS-TAPMFVVGVNEDKYTPDLNIISNASCTTNCLAPLAKIINNKFGIEEGLMTTVHSITATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.167e-46
Identity = 100/186 (53.76%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KVAINGFGRIGR   R    R DS LE+V IND G V+  + L K DS  G +   V   G D + +DGK I V + R+P NLP   LG+D+V+E TG+F + E A  H+ AGAKKVLI+AP KGD+  T V GVN      D+ I+SNASCTTNCLAP + VL QK GI++G MTT HS+T DQ
Sbjct:    3 VKVAINGFGRIGRLAARAILSRPDSGLELVTINDLGSVEGNAFLFKRDSAHGTYPGTVTTEGNDMV-IDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTEKASAHLTAGAKKVLISAPAKGDVDRTVVYGVNHKDLTADDKIVSNASCTTNCLAPVLHVLQQKIGIVRGLMTTVHSFTNDQ 187          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 5.167e-46
Identity = 97/185 (52.43%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            ++V INGFGRIGR   R    R D  +E+V IND       +++LKYDST G FE  V+  G   + V+GK I+V S R+P NL W ++ +D+V+E TG+F+  + A KHIQAGAKKV+IT P K D P +V+GVN   YK  E I+SNASCTTNCLAP  KVL+ KFGI++G MTT H+ T  Q
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVEVQG-GALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVVITGPSKDDTPMFVMGVNHTTYK-GEAIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHATTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.814e-46
Identity = 95/186 (51.08%), Postives = 125/186 (67.20%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +K+ INGFGRIGRN  R     K+  +EVVAIND       +HLLKYDS  G  +A+V   G++ + V+GK I++ + R+P  L WG  G+++V+E TG F  R  A KH++AGAKKV+I+AP   +  T V+GVN D Y   +  +ISNA CTTNCLAPF KVL+ KFG+ +G MTT HSYT DQ
Sbjct:    3 VKIGINGFGRIGRNVFRA--ALKNDNVEVVAINDLTDANMLAHLLKYDSVHGKLDAEVVVDGSN-LVVNGKTIEISAERDPAQLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPASDEDITIVMGVNEDKYDAANHNVISNAPCTTNCLAPFAKVLNDKFGLKRGMMTTVHSYTNDQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.814e-46
Identity = 102/187 (54.55%), Postives = 126/187 (67.38%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGRN  R     K+  +EVVA+ND T      +HLLKYDS  G  +A+V  V  DG+SV+GK I V + RNP NL WG++G+D+V+E TG F  RE A KH++AGAKKV+I+AP K +  T V+GVN D Y  D   +ISNASCTT CLA F +VL Q FG +   MTT HSYT  Q
Sbjct:    3 VKVGINGFGRIGRNVFRA--AVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGRLDAEV--VVNDGVSVNGKEIIVKAERNPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKVENITVVMGVNQDKYDADAHHVISNASCTTICLAAFARVLHQIFGEVSRMMTTAHSYTNIQ 185          
The following BLAST results are available for this feature:
BLAST of EY660400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_YARLI1.112e-4854.84Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_CANAL2.478e-4856.45Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3PP_RALEH3.237e-4852.94Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH7.211e-4852.41Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3P_CHLPN6.104e-4755.91Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_PICCI1.776e-4654.84Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ZYMMO5.167e-4653.76Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3PC_TRYBB5.167e-4652.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BACME8.814e-4651.08Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BACCO8.814e-4654.55Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660400 ID=EY660400; Name=EY660400; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGCTTGTCTTTGCCCAGCTTAGCTTAGCCACCACTGCTTGCT
CTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTC
TGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCT
CAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGAT
GACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTCTAGGAAGCAGCAG
CAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCA
ATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGC
AAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAA
GCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTCGGCATCTTTGAAG
CCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTC
ATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTT
GGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGG
GTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCC
CCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGC
TTACAAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACT
GCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAG
GGGAACATGACCACCACACACTCGTACACTGGCGACCAAGACTACTCGAT
GCTAGCCACGCGGACTCAN
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