EY660400

Overview
NameEY660400
Unique NameEY660400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660400_ssr243 microsatellite EY660400_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10901 contig Csv1_Contig10901:140..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 1.273e-44
Identity = 92/185 (49.73%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            K+ INGFGRIGRN  R      +S +EVVAIND    K  +HLLKYD+  G   A+V     + I V+GK I+V++ R+P  LPW D G+++V+E TG F  +  A KH+    KKV+I+AP   +  T V+GVN + Y   +  ++SNASCTTNCLAPF KVL++KFG+ +G MTT HSYT DQ
Sbjct:    3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVS-ANENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIISAPASDEDITVVMGVNHEQYDAANHNVVSNASCTTNCLAPFAKVLNEKFGVKRGMMTTIHSYTNDQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.662e-44
Identity = 93/186 (50.00%), Postives = 124/186 (66.67%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW + G D VIE TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSENGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPS-ADAPMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.662e-44
Identity = 93/186 (50.00%), Postives = 124/186 (66.67%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW + G D VIE TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSDNGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPS-ADAPMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.662e-44
Identity = 100/186 (53.76%), Postives = 126/186 (67.74%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KVAINGFGRIGR  LR    RK   LEVVA+ND    V  A+++ KYDST G ++ +V   G D + +DG  I V   ++P NLPWG LG+D+VI+ TGVF + + A KH+ AGAKKV+ITAP K   P +VVGVN D Y   E I+SNASCTTNCLAP  K+++ +FGI +  MTT HS T  Q
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRK--ALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTTSGND-LVIDGHKIAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSK-TAPMFVVGVNEDKYN-GETIVSNASCTTNCLAPIAKIINDEFGIDEALMTTVHSITATQ 182          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44
Identity = 94/186 (50.54%), Postives = 125/186 (67.20%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            + V++NGFGRIGR   R    RKD  + +VAIND       A+++ KYDST G F+ +V     D I ++GK + V + ++P  LPWG LG+D+ I+ TG+F + + A KHI+AGAKKV+ITAP  G  P YV+GVN + Y PD+ I+SNASCTTNCLAP  KV+  +FGI +G MTT HS T  Q
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKD--INLVAINDPFISTDYAAYMFKYDSTHGRFDGEVSH-DKDHIILNGKKVAVFNEKDPAALPWGKLGVDVAIDSTGIFKEMDSANKHIEAGAKKVVITAPS-GSAPMYVMGVNEETYTPDQKIVSNASCTTNCLAPLAKVIHNEFGIKEGLMTTVHSMTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44
Identity = 96/186 (51.61%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            + + INGFGRIGR  LR    R D  ++VVA+ND     + A+++ KYDST G ++ +V     D + +DG+ I+V   ++P ++PWG  G+D VIE TGVF   EGA KHI  GAKKV+ITAP   D P +VVGVN   Y PD  I+SNASCTTNCLAP  KV++ KFGI +G MTT HS T  Q
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSD--IKVVAVNDPFIAPEYAAYMFKYDSTHGRYKGEVTSKD-DSLVIDGQSIKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSS-DAPMFVVGVNEQKYTPDLKIVSNASCTTNCLAPLAKVINDKFGIEEGLMTTVHSITATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44
Identity = 96/185 (51.89%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R    +K S +E++AIND    +  +++LKYDST G+F+  +     D I ++GK I+V S ++P  L W DL ID+VIE TG+F+ RE A KHI AG+KKV++T P K DIP +V G N   Y+  E I+SNASCTTNCLAP  KV+D  FGII+G MTT H+ T  Q
Sbjct:    3 IKVGINGFGRIGRVLFRL--AQKRSDIEIIAINDLLAPEYIAYMLKYDSTHGVFKKHIT-FDKDNIIINGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFLKREQAYKHILAGSKKVVVTGPSKDDIPMFVRGANFHKYQ-GESIVSNASCTTNCLAPLSKVIDDNFGIIEGLMTTVHASTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.171e-44
Identity = 95/187 (50.80%), Postives = 129/187 (68.98%), Query Frame = 3
Query:  282 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            K+KVAINGFGRIGR   R      D  ++VVAIN +   +  +HL+KYD+  G ++ +V   G D + V+GK + ++++R+P  LPW +  ID+V+E TG F  ++ A  HI+AGAKKV++TAPGK +  T V+GVN D +  +   IISNASCTTNCLAP VKVLD++FGI  G MTT H+YT DQ
Sbjct:    2 KVKVAINGFGRIGRMVFR--KAMLDDQIQVVAINASYSAETLAHLIKYDTIHGRYDKEVV-AGEDSLIVNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAKKVILTAPGKNEDVTIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 3.703e-44
Identity = 99/191 (51.83%), Postives = 126/191 (65.97%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFV----DREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +K+AINGFGRIGRN  +    R    +++VAIND    K  +HLLKYDST G++   V+    DG I VDG+ I++++ R+P NLPW  LGID+VIE TGVF     D+ G   H+  AGAKKV++T P K +I T V+GVN      D   +SNASCTTNCLAP  KVL + FGI +G MTT H+YT DQ
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE--SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQ 186          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.837e-44
Identity = 97/185 (52.43%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQD 842
            KVAINGFGRIGR  LR     +   LEVVAIND    K  +HL KYDS+ G F  +++ V      V+GK ++V +  +P  LPWG+LGID+V+E TG F  +E A  H++AGAKKV+I+AP   D+ T V  VN +     E +IS ASCTTNCLAP  KVL+ KFGI KG MTT H+YT DQ+
Sbjct:    3 KVAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGELGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPAGNDLKTIVFNVNNEDLDGTETVISGASCTTNCLAPMAKVLNDKFGIEKGFMTTIHAYTNDQN 184          
The following BLAST results are available for this feature:
BLAST of EY660400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P1_BACCE1.273e-4449.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_COCP71.662e-4450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM1.662e-4450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_KLULA1.662e-4453.76Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_ZYGRO2.171e-4450.54Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_DEBHA2.171e-4451.61Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_BUCAI2.171e-4451.89Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P2_BACSU2.171e-4450.80Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_BORBU3.703e-4451.83Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_CLOPA4.837e-4452.43Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660400 ID=EY660400; Name=EY660400; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGCTTGTCTTTGCCCAGCTTAGCTTAGCCACCACTGCTTGCT
CTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTC
TGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCT
CAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGAT
GACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTCTAGGAAGCAGCAG
CAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCA
ATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGC
AAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAA
GCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTCGGCATCTTTGAAG
CCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTC
ATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTT
GGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGG
GTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCC
CCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGC
TTACAAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACT
GCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAG
GGGAACATGACCACCACACACTCGTACACTGGCGACCAAGACTACTCGAT
GCTAGCCACGCGGACTCAN
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