EY660400

Overview
NameEY660400
Unique NameEY660400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660400_ssr243 microsatellite EY660400_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10901 contig Csv1_Contig10901:140..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.317e-44
Identity = 96/185 (51.89%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQD 842
            K+AINGFGRIGR  LR     +   LEVVAIND    K  +HL KYDS+ G F  +++ V      V+GK ++V +  +P  LPWGDLGID+V+E TG F  +E A  H++AGAKKV+I+AP   D+ T V  VN +     E +IS ASCTTNCLAP  KVL+ KFGI KG MTT H++T DQ+
Sbjct:    3 KIAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPAGNDLKTIVFNVNNEDLDGTETVISGASCTTNCLAPMAKVLNDKFGIEKGFMTTIHAFTNDQN 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.250e-44
Identity = 95/185 (51.35%), Postives = 121/185 (65.41%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KVAINGFGRIGRN LR       + +EVVAIND G V+  +HL ++DS  G F  +VK  G D I V    I+V + RNP  LP  +LG+D+ +E TG+F  R+ A  H+ AGAK+VL++AP  G   T V GVN +    +  ++SNASCTTNCLAP  KVL+   GI KG MTT H+YTGDQ
Sbjct:    3 VKVAINGFGRIGRNVLRAIIESGRTDIEVVAINDLGPVETNAHLFRFDSVHGRFPGEVKVAG-DTIDVGRGPIKVTAVRNPAELPHKELGVDIALECTGIFTSRDKAAAHLAAGAKRVLVSAPADGADLTVVYGVNHEKLTNEHLVVSNASCTTNCLAPVAKVLNDAVGIEKGFMTTIHAYTGDQ 186          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.250e-44
Identity = 96/187 (51.34%), Postives = 118/187 (63.10%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQD 842
            +++ INGFGRIGRN  R    R  S LE+VA+ND G V   +HLL YDS LG F  +V       I V  + I+V++ R+P  LPWGDLG+D+VIE TG+F D   A  H+  GAKKV+I AP  G+  T V+GVN   Y P+   IISNASCTTNCL    KVL    GI  G MTT H+YT DQ+
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARS-SELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEVT-AEPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAKKVIIAAPASGEDFTVVLGVNDGDYDPERHTIISNASCTTNCLGVLAKVLHDAVGIDSGMMTTVHAYTQDQN 187          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 8.250e-44
Identity = 96/185 (51.89%), Postives = 127/185 (68.65%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +K+ INGFGRIGR   R    R++  +EVVAIND    K  +++LKYDST G F+ D++ V  + + ++GK I++ S ++P  L W  L ID+VIE TG+F+ ++ A KHI +GAKKV+IT P K DIP +V G N D YK  E I+SNASCTTNCLAP  KV+D  FGII+G MTT H+ T  Q
Sbjct:    3 IKIGINGFGRIGRVLFRLAQEREN--IEVVAINDLLDPKYIAYMLKYDSTHGNFKKDIE-VKNNNLIINGKKIRITSIKDPEKLMWDKLLIDVVIESTGLFLTKDTAYKHILSGAKKVVITGPSKDDIPMFVRGANFDKYK-GEKIVSNASCTTNCLAPLSKVIDDHFGIIEGLMTTVHASTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.077e-43
Identity = 99/184 (53.80%), Postives = 121/184 (65.76%), Query Frame = 3
Query:  291 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            V INGFGRIGR  LR    R D  + V+AIND       A+++ KYDST G F+  V   G   + ++GK I+V   R+P N+PWG  G+D V++ TGVF   EGA KHI AGAKKV+ITAP K D P +VVGVN + Y PD  I+SNASCTTNCLAP  KV++  FGI +G MTT HS T  Q
Sbjct:    5 VGINGFGRIGRLVLRIALSRDD--INVIAINDPFIAPDYAAYMFKYDSTHGKFKGTVTHEGKY-LVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSK-DAPMFVVGVNHEEYTPDIKILSNASCTTNCLAPLAKVINDIFGIEEGLMTTVHSITATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.407e-43
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  279 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            A +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST GIF  ++K  G D + ++GK ++  + R+P  +PW + G D V+E TGVF   + A  H+Q GAKKV+I+AP   D P YV+ VN  +Y     +ISNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQEGND-LVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTTTDKAKAHLQGGAKKVIISAPS-ADAPMYVMVVNEKSYDGSADVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.407e-43
Identity = 93/185 (50.27%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N D Y+  + I+SNASCTTNCLAP  KV++  FGII+G MTT H+ T  Q
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.407e-43
Identity = 93/185 (50.27%), Postives = 125/185 (67.57%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N D Y+  + I+SNASCTTNCLAP  KV++  FGII+G MTT H+ T  Q
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 2.400e-43
Identity = 95/189 (50.26%), Postives = 122/189 (64.55%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQDYS 848
            +++AINGFGRIGRN LR  + G     L+VVAIND G     +HL +YDS  G F  +V+    + + V G  I V + RNP  LPW  LG+D+V+E TG+F  R+ A  H+QAGA KVLI+APGK    T V GVN +  +    I+SNASCTTNCLAP  +VL ++ GI  G MTT H+YT DQ+ S
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGHFPGEVEH-DAESLRVMGDRIAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVNHEVLRASHRIVSNASCTTNCLAPVAQVLHRELGIEHGLMTTIHAYTNDQNLS 190          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 4.094e-43
Identity = 93/186 (50.00%), Postives = 125/186 (67.20%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +++ INGFGRIGR  LR    +++SP+EVVAIND       ++L KYDST G F        +DG  V G + +  ++ ++   LPW DL +D+V+E TG+FV+R+   KH+ +GAK+VLITAP KGD+PT+V+GVN   + P + IISNASCTTNCLAP  KVL   FGI +G MTT H+ T  Q
Sbjct:    1 MRIVINGFGRIGRLVLRQIL-KRNSPIEVVAINDLVAGDLLTYLFKYDSTHGSFAPQA--TFSDGCLVMGERKVHFLAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQQFDPADVIISNASCTTNCLAPLAKVLLDNFGIEEGLMTTVHAATATQ 183          
The following BLAST results are available for this feature:
BLAST of EY660400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_CLOAB6.317e-4451.89Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_XANFL8.250e-4451.35Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_STRAE8.250e-4451.34Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BUCAP8.250e-4451.89Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_PICAN1.077e-4353.80Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_COLGL1.407e-4348.94Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_SALTY1.407e-4350.27Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI1.407e-4350.27Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P_PSEAE2.400e-4350.26Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_CHLTR4.094e-4350.00Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660400 ID=EY660400; Name=EY660400; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGCTTGTCTTTGCCCAGCTTAGCTTAGCCACCACTGCTTGCT
CTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTC
TGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCT
CAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGAT
GACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTCTAGGAAGCAGCAG
CAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCA
ATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGC
AAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAA
GCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTCGGCATCTTTGAAG
CCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTC
ATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTT
GGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGG
GTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCC
CCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGC
TTACAAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACT
GCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAG
GGGAACATGACCACCACACACTCGTACACTGGCGACCAAGACTACTCGAT
GCTAGCCACGCGGACTCAN
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