EY660400

Overview
NameEY660400
Unique NameEY660400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660400_ssr243 microsatellite EY660400_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10901 contig Csv1_Contig10901:140..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.722e-42
Identity = 90/185 (48.65%), Postives = 126/185 (68.11%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +K+ INGFGRIGR   R    R  S +E++AIND   V+  +++LKYDS  G F   +  +  + + V+GK I++ + ++P NL WGDL ID+VIE TG+F+  E + KHIQAGAKKV+IT+P K + P +V GVN + Y   + I+SNASCTTNCLAP  KV++ +F I++G MTT H+ T  Q
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLR--SNIEILAINDLINVQYIAYMLKYDSIHGNFNGKIV-IKNETLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFLTTEDSYKHIQAGAKKVIITSPPKDNTPMFVRGVNFNEY-VGQKIVSNASCTTNCLAPLAKVINDEFEIVEGLMTTVHATTATQ 183          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 90/188 (47.87%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  279 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            A +KV INGFGRIGR   R  +  +   +EVVA+ND     + A+++LKYDST G F  D++ V  DG+ V+ + ++  + RNP  +PW + G + ++E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN  +Y  D  +ISNASCTTNCLAP  KV++ +F II+G MTT HSYT  Q
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTV-EDGLVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPS-ADAPMFVMGVNHKSYTTDLEVISNASCTTNCLAPLAKVINDEFTIIEGLMTTIHSYTATQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 91/189 (48.15%), Postives = 123/189 (65.08%), Query Frame = 3
Query:  279 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            AK+K+ INGFGRIGR   R    R D  +E+VA+ND        +++ KYDS  G ++ D   V      + G K + V ++RNP  +PW   G D+++E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN + YKP+  IISNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q
Sbjct:    3 AKIKIGINGFGRIGRLVARVALKRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQ 188          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.317e-41
Identity = 91/189 (48.15%), Postives = 121/189 (64.02%), Query Frame = 3
Query:  279 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            A +K+ INGFGRIGR   R    R+D   E+VA+ND     +  +++ KYDS  G ++  D+K      +    K + V  NRNP  +PWG  G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YKP+  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q
Sbjct:    2 APIKIGINGFGRIGRLVARVILQREDC--ELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQ 187          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 94/193 (48.70%), Postives = 122/193 (63.21%), Query Frame = 3
Query:  267 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +A    ++VAINGFGRIGR   R    +K+  +E+VA+ND       +HLLKYDS  G F+  V  V  D  + +D K + V S ++P NLPW +  ID+V+E TG FV  EGA  H+QAGAK+V+I+AP K   I T V  VN      ++ IIS ASCTTNCLAP V VL++ FGI+ G M T H+YT DQ
Sbjct:    2 LAKSKTIRVAINGFGRIGRLVFRALLSQKN--IEIVAVNDLTHPDTLAHLLKYDSAHGEFKKKV--VAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAKRVIISAPAKQKTIKTVVYNVNHKIINAEDKIISAASCTTNCLAPMVHVLEKNFGILHGTMVTVHAYTADQ 190          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 89/185 (48.11%), Postives = 122/185 (65.95%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            KV INGFGRIGR   R  +      ++VVA+ND       A+++LKYDST G F+  ++    +G+ V+GK I+  + R+P  +PWG  G D ++E TGVF  +E A  H++ GAKKV+I+AP   D P +V+GVN  +Y  D  ++SNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q
Sbjct:    4 KVGINGFGRIGRIVFR--NAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIETY-EEGLIVNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPS-ADAPMFVMGVNNTSYTKDINVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.247e-41
Identity = 89/185 (48.11%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  288 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            KV INGFGRIGR   R  +  +   ++VVA+ND       A+++LKYDS  G F+  ++    +G+ V+GK I+  + R+P N+PWG  G + ++E TGVF  +E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FGII+G MTT HSYT  Q
Sbjct:    4 KVGINGFGRIGRIVFR--NAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFKGTIETYD-EGLIVNGKKIRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPS-ADAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYTATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 90/188 (47.87%), Postives = 124/188 (65.96%), Query Frame = 3
Query:  279 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            A  KV INGFGRIGR   R  +  +   +++VA+ND     + A+++LKYDST G F+ D+K V +DG+ V+GK ++  + R+P N+PW +     V+E TGVF   E A  H++ GAKKV+I+AP   D P YV+GVN + Y  +  +ISNASCTTNCLAP  KV++ +F II+  MTT HSYT  Q
Sbjct:    2 APTKVGINGFGRIGRIVFR--NAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIK-VLSDGLEVNGKKVKFYTERDPANIPWAESEAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPS-ADAPMYVMGVNNETYNGEADVISNASCTTNCLAPLAKVINDEFTIIESLMTTIHSYTATQ 185          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 90/186 (48.39%), Postives = 124/186 (66.67%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R  +  + + +++VA+ND       A+++LKYDST G F+ D+K  G + ++V+GK I+    ++P N+PW + G   V+E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YKPD   +SNASCTTNCLAP  KV+  K+ II+G MTT HSYT  Q
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKVDGNN-LTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSP-DAPMFVMGVNHETYKPDIEALSNASCTTNCLAPLAKVIHDKYTIIEGLMTTIHSYTATQ 184          
BLAST of EY660400 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.934e-41
Identity = 87/186 (46.77%), Postives = 121/186 (65.05%), Query Frame = 3
Query:  285 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGNMTTTHSYTGDQ 839
            +KV INGFGRIGR   R  +  +   + VVA+ND       A+++LKYDST G F+  +  V ++G++V+GK +     R+P ++PWG  G++ V+E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN   Y P   ++SNASCTTNCLAP  KV++  FG+ +G MTT HSYT  Q
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTID-VNSNGLTVNGKAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEKASAHLKGGAKKVIISAPS-ADAPMFVMGVNEKTYDPSVNVLSNASCTTNCLAPLAKVINDNFGLTEGLMTTIHSYTATQ 184          
The following BLAST results are available for this feature:
BLAST of EY660400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_BUCBP7.722e-4248.65Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_ERYGR1.317e-4147.87Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3PC_PEA1.317e-4148.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.317e-4148.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MYCPN1.720e-4148.70Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_ASPNG1.720e-4148.11Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_EMENI2.247e-4148.11Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_SCLSC2.934e-4147.87Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_COCHE2.934e-4148.39Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_AJECA2.934e-4146.77Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660400 ID=EY660400; Name=EY660400; organism=Citrus sinensis; type=EST; length=869bp
CACGCGTCCGCTTGTCTTTGCCCAGCTTAGCTTAGCCACCACTGCTTGCT
CTTGCTTGCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTC
TGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCT
CAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGAT
GACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTCTAGGAAGCAGCAG
CAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCA
ATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGC
AAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAA
GCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTCGGCATCTTTGAAG
CCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTC
ATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTT
GGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGG
GTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCC
CCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGC
TTACAAACCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACT
GCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAG
GGGAACATGACCACCACACACTCGTACACTGGCGACCAAGACTACTCGAT
GCTAGCCACGCGGACTCAN
back to top