EY660354

Overview
NameEY660354
Unique NameEY660354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660354 vs. ExPASy Swiss-Prot
Match: LAX1_ARATH (Auxin transporter-like protein 1 OS=Arabidopsis thaliana GN=LAX1 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 7.104e-81
Identity = 162/270 (60.00%), Postives = 179/270 (66.30%), Query Frame = 1
Query:  118 ETVVAGNYIEMEREEEDXXXXXXXXXX---FFWHGGSVYDAWFSCASNQVAQVLLTLPYXXXXXXXXXXXXXXXXXXXMGSWTAYLISILYVEYRTRKEREKV-DFRNHVIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLLHGQG*GGEALRPHQNGSLFYRSY*HSLHLLRTCCHSGDHACXVE-------ATKIKSIYLLA 894
            E  VAG  +E    EED             F WHGGS +DAWFSCASNQVAQVLLTLPY                   MGSWTAYLIS+LYVEYR R E+++   F+NHVIQWFEVLDGLLG +W+  GL FNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MT++TAWYLTIAS LHGQ  G      H   +     +  + ++L T    G HA  VE         K KSIYL+A
Sbjct:   16 EDEVAGRKVEDSAAEEDIDGNGGNGFSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLMGSWTAYLISVLYVEYRARMEKQEAKSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQAEG----VTHSGPTKLVLYFTGATNILYT---FGGHAVTVEIMHAMWKPRKFKSIYLMA 278          

HSP 2 Score: 88.1965 bits (217), Expect = 7.199e-17
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  725 FCMDRGEGVKHSGPTKMVLYFTGATNILYTFCGHAVTVEIMHAMWKPQKSSXFTCWHTXWVTLL 916
            F   + EGV HSGPTK+VLYFTGATNILYTF GHAVTVEIMHAMWKP+K        T +V  L
Sbjct:  222 FLHGQAEGVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSIYLMATLYVFTL 285          
BLAST of EY660354 vs. ExPASy Swiss-Prot
Match: LAX1_ORYSJ (Auxin transporter-like protein 1 OS=Oryza sativa subsp. japonica GN=Os01g0856500 PE=2 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.583e-80
Identity = 155/237 (65.40%), Postives = 171/237 (72.15%), Query Frame = 1
Query:  205 WHGGSVYDAWFSCASNQVAQVLLTLPYXXXXXXXXXXXXXXXXXXXMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLLHGQG*GGEALRPHQNGSLFYRSY*HSLHLLRTCCHSGDHACXVE-------ATKIKSIYLLA 894
            WHGGSV+DAWFSCASNQVAQVLLTLPY                   MGSWTAYLIS+LYVEYR+RKE+E V F+NHVIQWFEVLDGLLG +W+  GL FNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MT++TAWYL IA+LL+GQ  G      H   +     +  + ++L T    G HA  VE         K K IYLLA
Sbjct:   51 WHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEG----ITHTGPTKLVLYFTGATNILYT---FGGHAVTVEIMHAMWKPAKFKYIYLLA 280          

HSP 2 Score: 84.7297 bits (208), Expect = 7.959e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  737 RGEGVKHSGPTKMVLYFTGATNILYTFCGHAVTVEIMHAMWKPQKSSXFTCWHTXWVTLL 916
            + EG+ H+GPTK+VLYFTGATNILYTF GHAVTVEIMHAMWKP K        T +V  L
Sbjct:  228 QAEGITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTL 287          
BLAST of EY660354 vs. ExPASy Swiss-Prot
Match: LAX2_ORYSJ (Auxin transporter-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0447200 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.340e-79
Identity = 153/237 (64.56%), Postives = 169/237 (71.31%), Query Frame = 1
Query:  205 WHGGSVYDAWFSCASNQVAQVLLTLPYXXXXXXXXXXXXXXXXXXXMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLLHGQG*GGEALRPHQNGSLFYRSY*HSLHLLRTCCHSGDHACXVE-------ATKIKSIYLLA 894
            WHGGSV+DAWFSCASNQVAQVLLTLPY                   MGSWTAYLIS+LYVEYR RKE+E V F+NHVIQWFEVLDGLLG +W+  GL FNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGACC+TTVFIPSFHNYRIWSFLGL MT++TAWYL IA+ +HGQ  G      H   S     +  + ++L T    G HA  VE         K K IYL+A
Sbjct:   42 WHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLYVEYRARKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQVDG----VTHSGPSKMVLYFTGATNILYT---FGGHAVTVEIMHAMWKPQKFKYIYLVA 271          
The following BLAST results are available for this feature:
BLAST of EY660354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LAX1_ARATH7.104e-8160.00Auxin transporter-like protein 1 OS=Arabidopsis th... [more]
LAX1_ORYSJ1.583e-8065.40Auxin transporter-like protein 1 OS=Oryza sativa s... [more]
LAX2_ORYSJ1.340e-7964.56Auxin transporter-like protein 2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-021-C11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660354 ID=EY660354; Name=EY660354; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGATTTTATTTTATCTATTTATAGATTCTCAAATTGCTTCA
TTGATCCCCCAACTTAATTGATCGGTATATACTTATAAGTGCTATAGCAA
TGGCGTCAGAGAAAGTTGAGACTGTTGTAGCTGGAAACTACATTGAAATG
GAAAGAGAAGAAGAGGATTCCAAGTCTTCCAAGAGCAAACTTTCAAGCTT
CTTTTGGCATGGTGGTTCAGTTTATGATGCATGGTTTAGCTGTGCTTCTA
ACCAGGTCGCACAAGTGCTACTCACACTGCCATATTCATTTTCACAACTT
GGGTTGTTATCTGGGATTCTACTTCAGCTGTTTTATGGGTTAATGGGAAG
CTGGACTGCTTATCTTATAAGCATACTTTATGTTGAGTACAGAACTAGAA
AGGAGAGAGAAAAGGTTGATTTCAGGAATCACGTAATTCAGTGGTTTGAA
GTTCTTGATGGGCTACTGGGGAAGCACTGGAGGAATATAGGCCTATTTTT
CAACTGCACTTTTCTGCTATTTGGATCCGTAATCCAGTTAATCGCCTGTG
CAAGCAACATATACTACATAAATGACAATTTGGACAAGAGAACTTGGACC
TACATCTTTGGAGCATGTTGTGCGACAACTGTGTTCATTCCTTCATTCCA
TAATTACAGAATTTGGTCGTTTTTAGGCCTTATAATGACTTCCTTCACCG
CATGGTATCTCACCATTGCTTCCCTTCTGCATGGACAGGGGTGAGGGGGT
GAAGCACTCCGGCCCCACCAAAATGGTTCTCTATTTTACAGGAGCTACTA
ACATTCTCTACACCTTTTGCGGACATGCTGTCACAGTGGAGATCATGCAT
GCNATGTGGAAGCCACAAAAATCAAGTCNATTTACTTGTTGGCACACTTN
ATGGGTAACTCTACTTTACATCAG
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